Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq2795 116 1e-21 seq4764 105 2e-18 >seq2795 Length=11366 Score = 116 bits (128), Expect = 1e-21 Identities = 248/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 36884 ATTGCAGGCTGGGATATACCGACTTTATCAGCCAACTGTCCTTGAGATATGTCAGCGGCC 36943 || || ||||| || || ||| |||| | || || ||| |||| || || | || || Sbjct 10831 ATAGCTGGCTGAGAGATTCCGGCTTTTTGCGCTAATTGTTCTTGCGACATTTTCGCCGCA 10772 Query 36944 GACATAGCCGCGTTCAGTCGTTCTGCAAATGTTTTCATCTTATCAATATATAACCGAGGT 37003 || ||| | || ||||| | || |||||||| | | ||||||||||| || Sbjct 10771 CCCAGTGCCATTCTTAGGCGTTCAGATAACGTTTTCATGTGAGGAATATATAACCCCAGT 10712 Query 37004 TATGTAGAGTAAAATAACAAAGGTTATGGACAATGCCCATAACTTGGGTTATCTTT-TCA 37062 ||| || | | ||| ||| || ||||| | | ||||||| | |||||| ||| | Sbjct 10711 TATATAAAATCAAAGAACCAAAGTTATTGCACTTATCCATAACATTGGTTATATTTCTGG 10652 Query 37063 TTAATCCAGTAATCGGATAGGTAAAATCCATGAACAAAGTTATTCAACGAGCTTTAGAAA 37122 || | ||| || | || | || ||||||| |||||||||||| || | | | Sbjct 10651 TTTAACCATTACCACAAGAGACATAA-CCATGAATCTAGTTATTCAACGTGCCGTCAATA 10593 Query 37123 TCGTTGGCAGCC-AGAAGCGACTCGCAGATATTTGCGGCGTTAGCCAGCCAGCGGTTCAC 37181 ||||||| |||| |||| | || || | | | || || ||||| |||||||| || || Sbjct 10592 TCGTTGGTAGCCAAGAAAAG-CTGGCTGCTCTCTGTGGTGTTAGTCAGCCAGCAGTGCAT 10534 Query 37182 AAGTGGCTTAACGGTGGTTCCGTATCTCCGGAAAAAGTAACAGCCATCGTAAACGCTACT 37241 |||||||| | || || ||||||||| || ||| |||||||| ||||| || Sbjct 10533 AAGTGGCTGAGAGGAGGGCGAGTATCTCCGCAACGAGTGTTCGCCATCGTTAACGCCACG 10474 Query 37242 GGTGG 37246 | ||| Sbjct 10473 GATGG 10469 >seq4764 Length=15780 Score = 105 bits (116), Expect = 2e-18 Identities = 246/362 (68%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 9371 ATGCCTCAGGTGATGACACTATCAACTGAAGGTGGTGACCAGCAGAC-CATCAGTGTGCA 9429 ||||| || || |||||||| || || |||||||| || |||||||| || | || || Sbjct 9946 ATGCCGCAAGTCATGACACTTTCCACCGAAGGTGGCGATCAGCAGACGCAGGAA-GTTCA 10004 Query 9430 GTTCCTCGAAGATGACAAAGCGCGAACTATCCCAACGTTTAAAAACGCGGTGGTTCAGGT 9489 ||| | |||||||| | ||| ||| ||| || | ||||||| ||| |||||||| Sbjct 10005 ATTCTTGGAAGATGAGCAGGCGGAAACCATCGATACCTACAAAAACGGGGTTGTTCAGGT 10064 Query 9490 TTACACCTTTGCGCATGACCCTCAACTGGCGATCTACAAACGCCTCATTGACCTGGATGA 9549 |||||| || || |||||| | ||||| | ||| || ||||| | |||||||| Sbjct 10065 TTACACATTCGCTCATGACGCCAAACTGCCTATCCGTAAGTTGCTCATGAAACTGGATGA 10124 Query 9550 CTCCAGCGATACAACGGCGGTCTGGTTCCATAACCCACGCG-GCA-AAGCCGATCGTTTC 9607 | || | | || || || | ||| |||| || ||| ||| || || || | Sbjct 10125 CAGCAAGCAAATTACCGCAATCCGTTTCTATAA--CAAGCGTGCAGCAGAAGACCGCTAT 10182 Query 9608 TACTCAGCCAAAGTATCGTTCCAGCGCGTACCGCGCACGGAAATCAACGCCGTGGAAA-- 9665 ||| | || || ||||||||||| || || ||| | ||| || | ||||||| Sbjct 10183 TACACCGCTTCCGTGTCGTTCCAGCGTGTCCCTAACACAGCAATGAATGAAGTGGAAAAC 10242 Query 9666 GTAACGAAGCGCGTATGAACT-TCGAATCGGACATGCAGATTTACCCGATCGCCGATTCA 9724 || || ||| | | || || |||| || ||||||||||| | | ||| || | | Sbjct 10243 GTTACTGCCCGCTTCT---CTCTCAAATCTGAAATGCAGATTTATACCAACGCAGAATAA 10299 Query 9725 TC 9726 || Sbjct 10300 TC 10301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158494771408112