Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq10737 176 1e-39 seq2795 132 1e-26 >seq10737 Length=14001 Score = 176 bits (194), Expect = 1e-39 Identities = 1185/1871 (63%), Gaps = 98/1871 (5%) Strand=Plus/Plus Query 14315 TCGTATGCGTTTGGCGG---GGTAACCAACACTGCAGCGCAAGGCTACCCGGTGCCTCTG 14371 || ||||| ||||| || ||| | | || |||| || || |||| || || || Sbjct 7688 TCATATGCCTTTGGTGGCCCGGTTAACTCCATTGCA---CAGGGAAACCCCGTTCCGTTG 7744 Query 14372 CTTTATGGTAAGCGTCGAATCGGCGGAGCGATTATTTCTGCCGGAATTTATGTCGAAGAT 14431 || || |||| || ||||| || || || ||||| || || ||||| | |||||| Sbjct 7745 GGGTACGGCCAGCGCCGCATCGGGGGTGCCATCATTTCGGCGGGCATTTACGCCGAAGAC 7804 Query 14432 CAGCAGTAGATAACTAACC----TTTTT---TCTGGCCACCTTCGGGTGGCTTTTTT-AT 14483 ||||| ||||| | | ||||| || || | | || || ||||||||| || Sbjct 7805 CAGCA----ATAACGCATCATTGTTTTTCAGTCAGGTCGC--TCAGGCGGCTTTTTTTAT 7858 Query 14484 GGGCGCAATATGGCTACAGATAAAGTGTTAAAAGGCCGCAAGGGCGGCAGCTCAAGTTCC 14543 ||| | | ||||| |||| | | | | ||| |||||||||||| |||| | Sbjct 7859 GGGTGAACTATGGG-ACAGC--ATCTTATTCAGGGCAGCAAGGGCGGCAATGAAAGTCCA 7915 Query 14544 CGAACCCCTACCGAACAGCCTGATGATCTGCAATCTGTAGCGAAGGCAAAGATCCTCGTT 14603 || || || |||| ||| ||| |||||||| || | || || ||| | | Sbjct 7916 CGCACGCCGGTCGAATCGCCGGATTCCCTGCAATCGACCTCGTATGCCAAAATCGTATTG 7975 Query 14604 GCGCTTGGGGAAGGGGAGTTTGCTGGACAGCTCACCGGGAAGGATATCTACCTGGACGGA 14663 ||||| |||||||| |||||||| || ||| | ||| | |||||| ||||| Sbjct 7976 GCGCTGGGGGAAGGTGAGTTTGCGGGCGGGCTGAACGGCACTAATATCTTTCTGGATAAC 8035 Query 14664 ACAGCGCTGGAGAATGCTGACGG-CTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCG 14722 || ||||| | | || || | |||| || || ||||| | |||||| || || Sbjct 8036 ACCCCGCTGATTGGTCCCGAGGGTCAGGCAAACTTTGAG-GGGGTGAAGTGGGAATTCCG 8094 Query 14723 CGCGGGAACGCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAG 14782 | | || |||| ||| | ||||||| || || |||| ||||| || | | Sbjct 8095 CCCCGGTACGCCCCATCAAGACTATATTCCCGGCATGCCCGCCGTGGAAAATGAACTGAC 8154 Query 14783 CGTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCT 14842 ||| || ||||| || || || || ||| | || | |||||||| || || Sbjct 8155 CGTCGGGACTGA---ATTAAATGAGTCA---TGGGTCAGATCGGTCACCAATACCCAACT 8208 Query 14843 TTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTC---AAACAGGAAGACGACGG 14899 || || || ||||| || | ||||| || || |||||| |||| ||||| Sbjct 8209 GTCGGCGGTGCGCCTTCGGTTATCCTGGCC---GCAATTGCAGAAACAGAAAGAAGACGG 8265 Query 14900 CGATCTGGTGGGTTACTCGG-TCAATTATGCGATTGACCTGCAGACGGACGGCGGCACAT 14958 || ||| || || ||| | ||||| |||||| || ||||| || || | | Sbjct 8266 GGACACGGTCGGCTA-TCGCATTGATTATCTGATTGAAGTGGCCACGGATGGGGGGGCGT 8324 Query 14959 GGCAGACGGTACTCAATACCAGC-GTGACCGGAAAAACGACGTCTGGTTATGAGCGCAGC 15017 ||| | ||| || | || ||| || || || || | ||||| || Sbjct 8325 ATCAGGAGTTACCCACG-CTGGCTGTGGATGGCAAGACTACCACCAAATATGAACGGTCA 8383 Query 15018 CACCGCATCGATTTACCGCA----------GGCTGGCAGCACCTGGACAATCCGCCTGCG 15067 |||||| |||||||||| | ||||||||| | || | |||| || Sbjct 8384 CACCGCGTCGATTTACCCAAAGCCCATTCTGGCTGGCAGGTGCGGG----TTCGCC-GCC 8438 Query 15068 TAAGATTACCTCTGACGCCAACAGCGCGAAGATCGGCGACACGATGA-CGCTGCAGAGCT 15126 | || || | ||| | | || ||| | ||| ||||| || || || | Sbjct 8439 T--GACCCCCAAACAGACCAGTAAC-CG--GATTGCCGATGCGATGGTCGTTGAAGCCAT 8493 Query 15127 TCACTGAGGTTATTGACGCCAAGTTACGATATCCAAACACAGCGTTACTCTACATCGAAT 15186 | || ||||| |||||||| || | | || || | || || ||| | | | | | | Sbjct 8494 T-ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGT 8552 Query 15187 TCGATTCAAGCCAGTTTAACGGCTCTATCCCGCAGATCTCCTGCGAGCCCCGCGGCCGTG 15246 | ||| | | ||||| | || |||||||||| ||||||| || ||| || Sbjct 8553 TTGATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCA 8609 Query 15247 TTATCCGCGTTCCTGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCG 15306 ||||||| || || |||| || || || || ||||| ||| || ||| | | Sbjct 8610 TTATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAG 8669 Query 15307 GTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTTGTTT 15366 | || ||||| ||||| ||||| || || || |||||||| | || || ||| | | Sbjct 8670 GGGCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCA 8729 Query 15367 CTGACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTGAT------AAATGGA 15420 |||||||||| || |||| ||| ||| |||| |||| | | |||||| Sbjct 8730 ATGACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGG 8789 Query 15421 CGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACG 15480 || || | |||| | | | ||||| ||| ||| || || ||||||||||| | | Sbjct 8790 ACCTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGG-GATG 8848 Query 15481 GTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAG 15540 | | || ||| |||||||| || || |||||| | | ||||||| || | Sbjct 8849 GAGCCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTG 8903 Query 15541 TCCTACGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA---GA 15597 |||| || ||| ||| || ||||||| |||||||||| ||||| || | || Sbjct 8904 TCCTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGA 8963 Query 15598 TTGTGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTAACGTTG 15657 |||| ||||| || ||||| ||| || |||| | || || ||||| ||||| Sbjct 8964 ATGTG---CTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGC 9020 Query 15658 TTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGG 15717 | |||| || |||||||| || || | ||||| || ||| |||| ||| ||| Sbjct 9021 GGGACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGG 9080 Query 15718 TTTCATGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCCGGTATTTGAGCAGG 15777 | |||||||| ||| |||| |||| || ||| |||| |||| || || | Sbjct 9081 TGAGCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTC 9140 Query 15778 CGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGC 15837 | | || ||||| | || ||| ||| || || || || ||||||||| ||| Sbjct 9141 AGTTAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGC 9200 Query 15838 AGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAATAACAAGGATCGCGTT 15896 || ||||| | || | ||| ||||| | | ||||| | | || || | Sbjct 9201 AGAGTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATG 9259 Query 15897 GTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTG 15956 || | ||| || |||||||| || |||||| ||| || || || |||| ||| Sbjct 9260 GTCACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTG 9319 Query 15957 GCAGACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTC 16014 || || | ||| ||| ||||| || |||| || || |||||||| | | | || | Sbjct 9320 GCGGATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGAC 9377 Query 16015 GCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACC 16074 | ||||| || ||| | || || ||| | || || || | || || |||| Sbjct 9378 GTAATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACC 9437 Query 16075 TTCCCTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTC 16130 | || || || | | || || | | || |||||||| ||||| ||||| | | || Sbjct 9438 TGCCGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TC 9493 Query 16131 ACAGTCACCAC 16141 || |||||||| Sbjct 9494 ACGGTCACCAC 9504 Score = 80.6 bits (88), Expect = 6e-11 Identities = 163/242 (67%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 12818 ATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGC 12877 ||||||| ||| | ||||| | | | ||||| || ||| || || || ||||| | Sbjct 6521 ATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTTGGTGATTC 6580 Query 12878 AAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAAC 12937 |||| || || | || ||||| | | || | || ||| || || || || | Sbjct 6581 AAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCACCCACCGAGC 6640 Query 12938 ATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCA 12997 | ||| ||| || ||||| || || || || || ||| || | | |||| Sbjct 6641 AATTTTGCCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTTGCCA 6700 Query 12998 TCGTTCACAGTCACCCTGACGCCACAACGCAGCCGAGCGAACTGGATAAAGCGCAATGCG 13057 |||| ||||||||||| |||||||| || ||||| ||| ||||||||| || ||||| | Sbjct 6701 TCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAATGTG 6760 Query 13058 AC 13059 || Sbjct 6761 AC 6762 >seq2795 Length=11366 Score = 132 bits (146), Expect = 1e-26 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 32258 AATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 32317 |||||| || |||||||||||||| || || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 32318 ATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 32377 || || || ||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 32378 AACGGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTGTAGCGCGT-GTCACGATG 32436 | ||| ||||| || | || ||| | || |||||||| ||| || || ||||||||| Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTT-CGTGTTGTCACGATG 3741 Query 32437 AAATCGACCG 32446 |||| ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117173765862152