Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq10339 1236 0.0 seq11290 120 1e-22 >seq10339 Length=11660 Score = 1236 bits (1370), Expect = 0.0 Identities = 1477/1983 (74%), Gaps = 45/1983 (2%) Strand=Plus/Minus Query 5462 TTGGCCTTGACCACCGGAATGTCGCCGTAGGCGTTGGAGTTGTCGGTGGGGGGCTTGCGG 5521 ||| |||| ||||| || | |||| | ||| || | | |||||| || | ||||||| Sbjct 6979 TTGTCCTTCACCACGGGCACGTCGGCATAGCCGCGGCTGGCGTCGGTCGGTGCCTTGCGG 6920 Query 5522 AAGATCAGCAGGTACTCGGGCATGCCGACACCCATCTTGGTGCCGTCCTTGCACTGTTCC 5581 |||||||||||||||||| |||||||| ||||| | ||| |||||||| || || Sbjct 6919 AAGATCAGCAGGTACTCGCACATGCCGAAGCCCATGCGCGAGCCATCCTTGCATTGCTCG 6860 Query 5582 GTCCACGAGAGGCGGTAGGTCTGGGCGTTCTCGCGAACCACGTCGGTGACGATGGTCTTC 5641 | | ||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 6859 CTGTAGCCCAGGCGGTAGGTCTGGTTGTTCTCGCGCACCACGTCGGTGACGATGGTCTTG 6800 Query 5642 ATGCCCATATAGGCCCAGCCATGCTTGACGAAGGCTCGAGTCACT-TCCATGTGGAAGGG 5700 ||||| || |||| || | || | || | | | |||| || |||||| Sbjct 6799 CGGCCCACGAAGTGGAAGCCG-GCCCGGCGGAAGCAGGCGATGGTGTCCACGTCGAAGGG 6741 Query 5701 GTAGACGGTCTGGAAGCCAAGGCCGGTCA---TTCCGCCGGGAATGATGCGATCCTTCAC 5757 ||| ||||||||||||| | ||| || | |||| ||| | |||||| | ||| || Sbjct 6740 GTACTCGGTCTGGAAGCCGACGCCCTCCACCATGCCGCTGGGCACGATGCGGTTCTTGAC 6681 Query 5758 GTGGATGCAGGCCAGACGCCCGGGGATGGTCACGCGCAGCAGTTCCGGGATCAGATAGTC 5817 ||||||| ||||| | || || || |||||||||||| ||||| | ||| |||| Sbjct 6680 GTGGATGGCGGCCACCCTGCCCGGCATCAGCACGCGCAGCAGCTCCGGCACCAGGAAGTC 6621 Query 5818 CATCTGCTCGAAGAAGTGCGCGTTGTCGTCGGTGTGGCCGAAGTCGGCGTAGTTCGGCGA 5877 |||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||| Sbjct 6620 CATCTGCTGGAAGAAGTGCGCGTTGCTGTCGGTGTGGCCGAAGTCGGCGAAGTTGGGCGA 6561 Query 5878 GTACTCGTACTGGGTGCTGAAGGGGATGCTGGTGATGGTCAAGCCGACGCTGTTGCTTTC 5937 |||||||||||| |||||||||||||||||||| | || ||| ||||||| ||| | Sbjct 6560 GTACTCGTACTGCGTGCTGAAGGGGATGCTGGTCAGCACCAGGCCCACGCTGTCGCTGGC 6501 Query 5938 CATGCGGCAGGTTTCGAGCACGGTGTCGTTGTTGACGATGGTGTAGTCCTTGCCCTTG-- 5995 |||||||| || ||| |||| |||||||||||| | ||| || |||| Sbjct 6500 CATGCGGCGCGTCTCGTTCACGCAGTCGTTGTTGACCAGCACGTACTCGCCGCCCGGCGC 6441 Query 5996 ----ATCTCGACGCGCTCCACGCCCATGGAGCGGGTGAGGGTCTGTGCCATGGCGGCCAC 6051 | ||||||||||||||||||||||| |||| | || ||||| |||||| || Sbjct 6440 GCGCACCTCGACGCGCTCCACGCCCATGGCGCGGCTCAGCGTCTGGATCATGGCCGCGTG 6381 Query 6052 GGACAGGCCGTACTGCTTGATGATCTCGGTCATGCGCTGAACCATGGTG-TTGTGCTGCT 6110 |||| ||| | | ||||||||| || |||||||| || | || | |||||||| Sbjct 6380 CGACAACCCGAATTCCTTGATGATTTCCGTCATGCG-TGCCACTTGCTCCTTGTGCTGGG 6322 Query 6111 GCCACTTCCGTTCGAGTTGGCGGCGGATGTCGCGCTCGGCCTCGGTATAGATCAGGTCGA 6170 ||| || ||||| || ||||| | ||||||||||||||||| ||||||||||||| Sbjct 6321 CCCATTTGCGTTCCAGGGTCCGGCGCACCTCGCGCTCGGCCTCGGTGTAGATCAGGTCGA 6262 Query 6171 TGCGCACACGGCCTGTCTGCAGGAATCGGTGCAGGCGGTGAATGGACTGGATGAAGTCGT 6230 ||||||| ||| ||||||||||| || || |||||||| | ||||||||||||||| Sbjct 6261 TGCGCACCTGGCGCGTCTGCAGGAAGCGCTGGAGGCGGTGCACCGACTGGATGAAGTCGG 6202 Query 6231 TGAACTTGAAGCCGATGCCCAGGTAGATGGCCCACGAGCAGTGGCGCTGGAAGTTGCAGC 6290 ||||||||||||||||||||||||||| ||||| | |||||| ||||| | |||||||| Sbjct 6201 CGAACTTGAAGCCGATGCCCAGGTAGATCGCCCAGGCGCAGTGCCGCTGCAGGTTGCAGC 6142 Query 6291 CGCTGCCTGCGATCACTGGTTTGGCAGC-CAGTTCCTGGAACTCGCCGTCGCTGAACTGG 6349 ||||||| | ||| || ||| | || ||| ||||||| | ||| |||||||| Sbjct 6141 CGCTGCCCAGCAGCACGGGCTTG-CTGCTCAGCTCCTGGATCAGGCCATCGCTGAAGGCC 6083 Query 6350 ACAATCGCGCGCTCGCGCTC---CTCCAGATCCTGGGCGCCGTAGACGCTGATGGCGGTG 6406 || | | | |||||||||| |||| | ||||||| ||||||||||||| ||| || Sbjct 6082 ACCACCAGGGGCTCGCGCTCGGTCTCCGGGTCCTGGGTGCCGTAGACGCTGGCGGCCGTC 6023 Query 6407 GGGATAGCGGCCTCGATCGCGTGGCGTTCCGCCTCGAGGTCATGCCAGATGATCCGGTGA 6466 ||||| ||| |||||| ||| |||| || |||| ||||| |||||||| | ||||| Sbjct 6022 GGGATGGCGCGCTCGATGGCGCGGCGCTCATCCTCCAGGTCGTGCCAGATCACACGGTGG 5963 Query 6467 GCATCTGGAGCCTCGGCCCGGATCTCCATCAGTTTGGCGATCCGGGCAGGAAGGCTCTCG 6526 || | || ||||||| || | |||||||| ||||| | || ||| ||||| ||| Sbjct 5962 GCGGCCGGGTCCTCGGCGCGCAGCTCCATCATCTTGGCCACGCGCGCATCCAGGCTGTCG 5903 Query 6527 CGCTTCTCTGCG-GCGGCGTCCTGCACGCCAATGGCGGTGTTGC--GAAGCAGGCGGCCC 6583 |||||||| ||| || |||||| |||||| ||||| || || ||| || | || Sbjct 5902 CGCTTCTC-GCGCGCCGCGTCCACCACGCCGATGGCC-TGGCGCTTGAA-CATCTGCGCC 5846 Query 6584 TGGCCGTTACGCTCATGG--CCAGCGTGCGAGTGGTCGGACGGTACTTCGTGCCAGCGGA 6641 ||||||| | | ||| ||||||| | |||||| | ||| | ||||||||||||| Sbjct 5845 TGGCCGT--CCATATTGGTACCAGCGTCGGCGTGGTCCGCCGGGATCTCGTGCCAGCGGA 5788 Query 6642 TGTCCAGTTCCGGTAGCGCGTAGCCTTCGTCGCTGAACCCGAGGTCGCTGGGGCGCTGAA 6701 |||| | ||| ||| ||||||| ||||||||| | |||||||| ||| ||| | Sbjct 5787 TGTCGATGGGCGGCAGCTCGTAGCCGTCGTCGCTGTAGCCGAGGTCCGAGGGCTTCTGCA 5728 Query 6702 CGAAGATCGCCCAGGACGCCACCCACATCCAGAACTCGCCCTCTTTGTGGGCATGGATG- 6760 |||| | |||||| |||||||||| |||||| |||| ||| | | || || | Sbjct 5727 CGAACAGGGCCCAGCTTGCCACCCACAGCCAGAAGTCGCGCTC---GCGCGCTGGGCTCA 5671 Query 6761 --GTGAGTTGGTCGGCCTTCTCAGAGTTGCGTTTGAAGAACCTGGTCTTGGCCTGGCCGA 6818 || || | |||||||||||| |||||| |||||||| | |||||||||||||| | Sbjct 5670 GCGTCAGGTTGTCGGCCTTCTCGCTGTTGCGCTTGAAGAAACGCGTCTTGGCCTGGCCAA 5611 Query 6819 CATCCATCACGCCGAGGAAGGCCGAGTAAGCCAGTAGCTCGATGTATTCGTTCGGGCTTG 6878 | ||||||||||| |||||||| ||| ||||| ||||||| | ||||| || || | Sbjct 5610 CGTCCATCACGCCCAGGAAGGCGCTGTAGGCCAGCAGCTCGACAAACTCGTTTGGACTGG 5551 Query 6879 GCGTGGCAGTGGCCACGTACCGGTACCGGACGCCATCGC------CGCGGACGCCGGCGG 6932 ||||||| ||||||||| | || ||| | |||||| ||| ||||| | | | Sbjct 5550 GCGTGGCCGTGGCCACGAAGCGATACGGCACGCCAGCGCTCTTCACGCGGTTGGCCATGT 5491 Query 6933 CGCGA---TCGTCACCAGCGAACAGAGCCATGAACTCGCGGAACGTCTTGCTGCCGCCGA 6989 |||| ||||| || |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 5490 CGCGCCGGTCGTCGCCGGCGAACAGCGCCATGAACTCGCGGAAGGTCTTGCTGCCGCCGA 5431 Query 6990 AGCCGCGAAGGCAACTGGCTTCGTCCAGGCTTGCCACGCTGAACCGGCGAGGGTCGAGCT 7049 ||||||| ||||| || ||||||||||| |||||||||||| | | ||||| |||| Sbjct 5430 AGCCGCGCAGGCATGCCGCCTCGTCCAGGCTGGCCACGCTGAACAGCAGCGGGTCCAGCT 5371 Query 7050 TGCCGTCGCGGACGGTCTCGTAATTGGTCAGGTAGATGGTGGTGGGGTCGTCTACCTCGT 7109 ||| |||||||| || ||||| ||||| ||||||||| | | |||||||| | || | Sbjct 5370 TGCGGTCGCGGATCGTTTCGTAGTTGGTGAGGTAGATGCCGTTCGGGTCGTCGGCTTCCT 5311 Query 7110 CGAAACTGCGGATGAACCGGACGGTGATGCCGAGCATCGCGGCGTCGCGGTAGAACTCCT 7169 ||| | |||||||||| ||| |||||||| || || ||||||||| |||||||| Sbjct 5310 CGATGCGGCGGATGAACTTGACCGTGATGCCAAGGCGTGCCGCGTCGCGGATGAACTCCT 5251 Query 7170 GGCGCACACCCAGCGGAATGGTGATGAGAGCGTAGCCGCCGGCTAGGTCGCGGGTGACGC 7229 | ||||| |||||||| ||| ||| || | ||||||| || | || || || Sbjct 5250 GACGCACGCCCAGCGGGATGACGATCAGGCCCATGCCGCCGATGCGGGCACGCACGATGC 5191 Query 7230 GCACCACCTCAAGCTGCATTACCGACTTGCCCAGGCCGAAGGCCGCGAAACAG-GCCGCG 7288 |||| | ||| | ||||| | | ||||||||||||||||||| ||| ||| |||||| Sbjct 5190 GCACGATCTCCAACTGCACGAAGGTCTTGCCCAGGCCGAAGGCCATGAA-CAGCGCCGCG 5132 Query 7289 CGGCCTTGGCGCACCAGCCAGGTGGCGATGGCGCGCTGGTGCGGCTTGAGCAGGGGGTTG 7348 | ||| |||| | |||| | | ||| |||||||||||| ||||| |||||| Sbjct 5131 CAGCCCAGGCGGATGGCCCAGATCACCGCAGCGATCTGGTGCGGCTTCAGCAGCGGGTTG 5072 Query 7349 AAGGCCGAGGGCTCCACTTCGAAGCCTTTCGGCTCGGCGAGGCGGACCTTCGCTCGCAAG 7408 | | | | | || || |||||||| || |||| ||||| ||||| || || | | Sbjct 5071 ACGTCGGCCTGGTCGACCTCGAAGCCCTTGGGCTTGGCGATCGTCACCTTGGCACGGAGG 5012 Query 7409 AAG 7411 ||| Sbjct 5011 AAG 5009 Score = 311 bits (344), Expect = 3e-80 Identities = 369/496 (74%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 4885 CTTGCAATAGCCGGCACCGTCCAGGAAGTAGCGGGAGTTCAGTTCGTGGGCGCGGGTTCT 4944 || ||| |||||| | || |||||||||||| | | ||| ||| | ||||| | Sbjct 7484 CTCGCAGTAGCCGACGCCATCCAGGAAGTAGGGCTTGGCCAGCTCGCAGCCGCGG---CC 7428 Query 4945 GCGCTTGAGCTTCAGC---GCGCAGTACGGGACGGTCATGATCCCGCCGAAGGGATCGAA 5001 |||| | | |||| || | ||| || || ||||| | ||||||||||| ||| | Sbjct 7427 GCGCCGGCCCAGCAGCACAGCCCGGTAGGGCACCGTCATCAGGCCGCCGAAGGGGTCGTA 7368 Query 5002 GACCAGGTCTCCTTCCATGGAGTACTGCACGATGGCCCGGTCGACGATGTCGAACTGCAG 5061 |||| || || | |||||||||||| ||| |||||||| | ||||||||||||| Sbjct 7367 GACCTCCTCGCCCTTCATGGAGTACTGGGTGATCGCCCGGTCCGCAATGTCGAACTGCAT 7308 Query 5062 CGGGCACAGGTGCATTTCCTGGCCCT-TGCTGTACTGCTGGGCGTTGAGCGTCCGCATGC 5120 ||||||||||||||| || | || ||| | ||||| | ||||||||| ||||||| Sbjct 7307 CGGGCACAGGTGCATCTCGCGCCCGGCTGCCG-ACTGCGCGCTGTTGAGCGTGCGCATGC 7249 Query 5121 GGGCGACGTCGGTCCATACGTCCGGGTGCCAGGACTGCGGTGGCAGCAGCATGAAGCCGG 5180 | | ||||||||||| |||||||| |||||| |||||| |||||||||||||| || Sbjct 7248 GCGTCACGTCGGTCCAGACGTCCGGATGCCAGCTCTGCGGCTGCAGCAGCATGAAGGTGG 7189 Query 5181 TGGGCAGCTTCCCGGTGACCTCCAGCGATTCGCCGATGCGGACGTGGTGCTCGAAGTCGT 5240 |||||||| | ||| | |||||| ||||||||||| |||| |||||||||||||| Sbjct 7188 TGGGCAGCATGCCGCGCTCGGCCAGCGCCTCGCCGATGCGCACGTCGTGCTCGAAGTCGT 7129 Query 5241 AGACGGTGGACAGGCTGTAGTCGCGGTACAGCTTGAACATCACGTCGTGCGGAATGCCTT 5300 ||||| ||| || | |||| |||||||||| || || | || | | ||||| Sbjct 7128 AGACGCGCTCCAGCGAGTGCTTGCGGAACAGCTTGAAGATGTCGGCATGGGTGAGGCCTT 7069 Query 5301 CGAAGTCCGCTTCAGTCAGCGGACGGTTGCCGTTGCTGCGGGTGAAGCCGTGGGCGTCCA 5360 | | ||| || |||||| | |||| ||| |||||||| | | ||||||||||||| | Sbjct 7068 CCAGCTCCTCTGGCGTCAGCAGCCGGTCGCCCTTGCTGCGCGCGTAGCCGTGGGCGTCGA 7009 Query 5361 ACTGCCAGCGTGCCCG 5376 |||||||||| | ||| Sbjct 7008 ACTGCCAGCGCGGCCG 6993 >seq11290 Length=3944 Score = 120 bits (132), Expect = 1e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 |||| | || | || || |||||||| ||| ||||||| ||||| |||||||| || Sbjct 838 CCCCTTCATGGCTCTCTCCCAGCTCAATCGCGAGCTGGAGCGCCGGCCCAACAAGCGGCC 779 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | | | || || ||||| ||| ||||||||||||||||| || | ||||| || Sbjct 778 AGTCAATGCCGATCTACGCGATAGCGGTGCGATCGAGCAGGACGCGGACCTCATCATTTT 719 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 || ||||| |||||||| ||| || ||| ||| || | ||||| || || |||| Sbjct 718 TGTCTACCGGGACGAGGTTTACAACAAGGACACCGAGCTCAAGGGCGTCGCGGAACTGAT 659 Query 21493 CATCGCGAAGCACCGCAACGG 21513 ||| | |||||||||||||| Sbjct 658 CATTGGCAAGCACCGCAACGG 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157083810243128