Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq13049 118 8e-22 seq7750 118 8e-22 seq12388 116 3e-21 seq8226 116 3e-21 seq1186 98.7 8e-16 seq10950 82.4 6e-11 >seq13049 Length=11502 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || ||||| |||||||| ||||| || | | || | | |||| || Sbjct 10518 ACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 10459 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || ||||| |||||||||||||| || || || ||||| || ||| Sbjct 10458 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGA 10399 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||| || | ||| ||||| ||||||| |||||| Sbjct 10398 ATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 10339 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || || || ||||||||| Sbjct 10338 CCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||||||||| || ||||| |||| | || | | | || || Sbjct 10062 ACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 10003 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || ||||| || | ||| || || || || || | |||||||| || || Sbjct 10002 AGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTTGTCCTGG 9943 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || | || | |||| || | ||| ||||| ||||||| |||||| Sbjct 9942 ATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 9883 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 || || | || || || || ||||||||| | | ||| || Sbjct 9882 CCAGTGAGGGTCTTCACGAAGATCTGCATGTTGAAGCGGAG 9842 >seq7750 Length=8304 Score = 118 bits (130), Expect = 8e-22 Identities = 120/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 101316 CGTCCA-ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 |||||| ||| |||||| || || ||||| |||||||| || || ||||| ||||| || Sbjct 1341 CGTCCAGATTACTTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTG 1400 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || ||||| || ||| |||| | |||||||||| ||| || ||||| || | Sbjct 1401 TCCTGGATTTTGGCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATG 1460 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| ||||||||||| || |||||||| Sbjct 1461 GTCTTTCCGGTCAAAGTTTTTACGAAGATCTGCAT 1495 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 ||| |||||| ||||| ||||||||||||||||| || || || ||||| || ||||||| Sbjct 3063 ATTACTTACCGGCAAAGATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAA 3122 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 | || || ||| |||| | |||||| || | ||| || |||||||||| || || | Sbjct 3123 TCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTAC 3182 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 | || | ||||| || || |||||||| || Sbjct 3183 CAGTCAGGGTTTTGACGAAGATCTGCATTGT 3213 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| | |||||| || || |||||||| || ||||| |||| Sbjct 2708 TTCCACCGCGCAGACGGAGAACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGG 2767 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | | | || || | ||||| || || || |||||||||||||| || || | Sbjct 2768 AGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGG 2827 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || || || || || | || | |||||||| | ||| | Sbjct 2828 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTA 2887 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | || || || || | ||| || ||||| || ||||| Sbjct 2888 CCTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||||||||||||| || || ||||| ||||| |||||||| || || Sbjct 2121 TACCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGG 2180 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || | || | ||||| || | ||| || |||||||||| || || || || | Sbjct 2181 CCTTAACGTTCTCGATGGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTTCCAGTAA 2240 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 2241 GAGTCTTCACGAAGATTTGCAT 2262 >seq12388 Length=21549 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| || ||||| || || ||||||||||| | | || | | | Sbjct 16005 ACGGAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCC 15946 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | ||||||||||||||| || || || || || Sbjct 15945 ATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTT 15886 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || ||||| ||| || | || | |||| || | ||| ||||| || |||| Sbjct 15885 GTCCTGGATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGAT 15826 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||| || || || || || ||||| || |||||| Sbjct 15825 CGTTTTACCAGTCAACGTCTTGACAAAAATTTGCATG 15789 >seq8226 Length=1064 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| ||||| || || || || ||||||||||| | | || | | | Sbjct 797 ACGGAGAACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCC 856 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| || || || || || ||||| ||||| || || || |||||||| || || Sbjct 857 ATCTTCCAACTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTT 916 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || || |||| | | ||||| | ||| ||||| ||||||| Sbjct 917 GTCCTGAATCTTGGCCTTGACGTTTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGAT 976 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || || || ||||| || |||||| Sbjct 977 TGTTTTACCAGTCAACGTCTTGACAAAGATTTGCATG 1013 >seq1186 Length=9182 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | ||| |||||||| ||||||||||| || || || || ||||| Sbjct 3182 CTTACCAGCGAAGATAAGACGTTGTTGATCAGGCGGAATGCCCTCCTTGTCCTGGATTTT 3241 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | ||||| |||| || ||||| || || | || ||||| || Sbjct 3242 GGCCTTCACATTTTCGATGGTGTCGGACGCCTCGACTTCGAGCGTAATTGTCTTGCCCGT 3301 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||| || ||||||||||| Sbjct 3302 GAGAGTTTTGACGAATATCTGCAT 3325 >seq10950 Length=25243 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 |||| |||| || || || | || ||||| || || || || ||||||||||| || | Sbjct 24609 ATTGTATACCGGCGAAAATAAGGCGTTGTTGGTCTGGAGGGATTCCTTCTTTATCCTGGA 24668 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 |||| || || | || | ||||| ||| ||| ||||| || |||| ||||| | Sbjct 24669 TTTTGGCCTTGACGTTCTCAATGGTGTCTGACCCTTCGACTTCGAGGGTGATGGTTTTTC 24728 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| ||||| || ||||| || ||||| Sbjct 24729 CGGTCAAAGTCTTGACAAAGATTTGCAT 24756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396209567927964