Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8226 95.1 9e-15 seq12388 93.3 3e-14 seq7750 91.5 1e-13 >seq8226 Length=1064 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||||||||| || | || | || |||||||| || ||||| || Sbjct 821 CTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAA 880 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||| || || | ||||| |||||||||||| |||||| || || Sbjct 881 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 940 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || || || || | || || ||||| || ||||| || || || Sbjct 941 TTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGAC 1000 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 1001 AAAGATTTGCAT 1012 >seq12388 Length=21549 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || ||||||||||||||||| || | || | || || Sbjct 15998 ACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCA 15939 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || || || ||||||||||| | || | ||||||||||| || Sbjct 15938 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTC-CTG 15880 Query 48678 ATCTTTTGTTTTACAGAACCCACAG-ACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| | ||| | | || | ||||| || || || || | || |||||||| Sbjct 15879 GATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTT 15820 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || |||||||| ||||| Sbjct 15819 ACCAGTCAACGTCTTGACAAAAATTTGCAT 15790 >seq7750 Length=8304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| ||||| || || ||| | || |||| || | |||||| ||||| || Sbjct 2745 CTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 2804 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||||| || | ||||| || |||||||| ||||| || || Sbjct 2805 GATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 2864 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || || ||||| | ||||| || ||||| || | ||| || || Sbjct 2865 CTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCAC 2924 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 2925 AAAGATTTGCATC 2937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 48613 CGTCCA-ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 |||||| | | ||||||||| || |||| |||||||| || | ||||| || |||||| Sbjct 1341 CGTCCAGATTACTTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTG 1400 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || || ||| | | | || ||||| || ||||| | ||||| Sbjct 1401 TCCTGGATTTTGGCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATG 1460 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||||||||| || |||||||| Sbjct 1461 GTCTTTCCGGTCAAAGTTTTTACGAAGATCTGCAT 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380871432567396