Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq10737 176 1e-39 seq2795 114 3e-21 >seq10737 Length=14001 Score = 176 bits (194), Expect = 1e-39 Identities = 1184/1871 (63%), Gaps = 98/1871 (5%) Strand=Plus/Plus Query 13546 TCGTATGCGTTTGGCGG---GGTAACCAACACTGCAGCGCAAGGCTACCCGGTGCCTCTG 13602 || ||||| ||||| || ||| | | || |||| || || |||| || || || Sbjct 7688 TCATATGCCTTTGGTGGCCCGGTTAACTCCATTGCA---CAGGGAAACCCCGTTCCGTTG 7744 Query 13603 CTTTATGGTAAGCGTCGAATCGGCGGAGCGATTATTTCTGCCGGAATTTATGTCGAAGAT 13662 || || |||| || ||||| || || || ||||| || || ||||| | |||||| Sbjct 7745 GGGTACGGCCAGCGCCGCATCGGGGGTGCCATCATTTCGGCGGGCATTTACGCCGAAGAC 7804 Query 13663 CAGCAGTAGATAACTAACC----TTTTT---TCTGGCCACCTTCGGGTGGCTTTTTT-AT 13714 ||||| ||||| | | ||||| || || | | || || ||||||||| || Sbjct 7805 CAGCA----ATAACGCATCATTGTTTTTCAGTCAGGTCGC--TCAGGCGGCTTTTTTTAT 7858 Query 13715 GGGCGCAATATGGCTACAGATAAAGTGTTAAAAGGCCGCAAGGGCGGCAGCTCAAGTTCC 13774 ||| | | ||||| |||| | | | | ||| |||||||||||| |||| | Sbjct 7859 GGGTGAACTATGGG-ACAGC--ATCTTATTCAGGGCAGCAAGGGCGGCAATGAAAGTCCA 7915 Query 13775 CGAACTCCTACCGAACAGCCTGATGATCTGCAATCTGTAGCGAAGGCAAAAATCCTCGTT 13834 || || || |||| ||| ||| |||||||| || | || |||||| | | Sbjct 7916 CGCACGCCGGTCGAATCGCCGGATTCCCTGCAATCGACCTCGTATGCCAAAATCGTATTG 7975 Query 13835 GCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTCACCGGCAAAGATATCTACCTGGACGGA 13894 ||||| ||||||||||||||||| || ||| | ||||| |||||| ||||| Sbjct 7976 GCGCTGGGGGAAGGTGAGTTTGCGGGCGGGCTGAACGGCACTAATATCTTTCTGGATAAC 8035 Query 13895 ACAGCGCTGGAGAATGCTGACGG-CTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCG 13953 || ||||| | | || || | |||| || || ||||| | |||||| || || Sbjct 8036 ACCCCGCTGATTGGTCCCGAGGGTCAGGCAAACTTTGAG-GGGGTGAAGTGGGAATTCCG 8094 Query 13954 CGCGGGAACTCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAG 14013 | | || || | ||| | ||||||| || || |||| ||||| || | | Sbjct 8095 CCCCGGTACGCCCCATCAAGACTATATTCCCGGCATGCCCGCCGTGGAAAATGAACTGAC 8154 Query 14014 CGTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCT 14073 ||| || ||||| || || || || ||| | || | |||||||| || || Sbjct 8155 CGTCGGGACTGA---ATTAAATGAGTCA---TGGGTCAGATCGGTCACCAATACCCAACT 8208 Query 14074 TTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTC---AAACAGGAAGACGACGG 14130 || || || ||||| || | ||||| || || |||||| |||| ||||| Sbjct 8209 GTCGGCGGTGCGCCTTCGGTTATCCTGGCC---GCAATTGCAGAAACAGAAAGAAGACGG 8265 Query 14131 CGATCTGGTGGGTTACTCGG-TCAATTATGCGATTGACCTGCAGACGGACGGCGGCACAT 14189 || ||| || || ||| | ||||| |||||| || ||||| || || | | Sbjct 8266 GGACACGGTCGGCTA-TCGCATTGATTATCTGATTGAAGTGGCCACGGATGGGGGGGCGT 8324 Query 14190 GGCAGACGGTACTCAATACCAGC-GTGACCGGCAAAACAACGTCTGGTTATGAGCGCAGC 14248 ||| | ||| || | || ||| ||||| || || | ||||| || Sbjct 8325 ATCAGGAGTTACCCACG-CTGGCTGTGGATGGCAAGACTACCACCAAATATGAACGGTCA 8383 Query 14249 CACCGTATCGATTTACCGCAGGCTGGCAGCACAT---GGACAATACGTCTGCGTAAGATT 14305 ||||| |||||||||| | ||| ||| || | || | || | Sbjct 8384 CACCGCGTCGATTTACCCAA-------AGCCCATTCTGGCTGGCAGGTGCGGGTTCGC-- 8434 Query 14306 ACCTCTGACGCC--AACAGCGCGAAAATCGG-----CGACACGATGAT-GCTGCAGAGCT 14357 | ||||| || ||||| | || ||| ||| ||||| | | || || | Sbjct 8435 -CGCCTGACCCCCAAACAGACCAGTAACCGGATTGCCGATGCGATGGTCGTTGAAGCCAT 8493 Query 14358 TCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAAT 14417 | |||||||||||||| || |||||| | ||||| | ||||| | | | ||| | | Sbjct 8494 T-ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGT 8552 Query 14418 TCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCG 14477 | || | | |||||| || ||| || || | || || ||||| ||| Sbjct 8553 TTGATGCCAAACAGTTCC---GCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCA 8609 Query 14478 TTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCG 14537 ||||||| || || |||| || || || || ||||| ||| || ||| | | Sbjct 8610 TTATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAG 8669 Query 14538 GTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTT 14597 | || ||||| ||||| ||||| || || || |||||||| | || |||||| | | Sbjct 8670 GGGCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCA 8729 Query 14598 CTGACCGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGAATATTGAT------AAATGGA 14651 ||||||||| || | || ||| ||| |||| |||| | | |||||| Sbjct 8730 ATGACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGG 8789 Query 14652 CTCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACG 14711 || || | |||| | | | ||||| ||| ||| || || ||||||||||| | | Sbjct 8790 ACCTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGGGAT-G 8848 Query 14712 GTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAG 14771 | | || ||| |||||||| || || |||||| | | ||||||| || | Sbjct 8849 GAGCCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTG 8903 Query 14772 TCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGAT-- 14829 ||||||| ||| ||| || ||||||| |||||||||| ||||| || | || Sbjct 8904 TCCTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGA 8963 Query 14830 -TGTGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTAACGTTG 14888 |||| ||||| || ||||| ||| || |||| | || || ||||| ||||| Sbjct 8964 ATGTG---CTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGC 9020 Query 14889 TTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGG 14948 | |||| || |||||||| || || | ||||| || ||| |||| ||| ||| Sbjct 9021 GGGACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGG 9080 Query 14949 TTTCATGGTCAGATCCGGGTAACGCTTATGCCGACGCAATGGAGCCGGTATTTGAGCAGG 15008 | |||||||||||| |||| |||| || || |||| |||| || || | Sbjct 9081 TGAGCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTC 9140 Query 15009 CGCTGGTGGCGCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGC 15068 | | || || || | || ||| ||| || || || || ||||||||| ||| Sbjct 9141 AGTTAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGC 9200 Query 15069 AGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAATAACAAGGATCGCGTT 15127 || ||||| | || | ||| ||||| | | ||||| | | || || | Sbjct 9201 AGAGTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATG 9259 Query 15128 GTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTG 15187 || | ||| || |||||||| || |||||| ||| || || || |||| ||| Sbjct 9260 GTCACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTG 9319 Query 15188 GCAGACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTC 15245 || || | ||| ||| ||||| || |||| || || |||||||| | | | || | Sbjct 9320 GCGGATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGAC 9377 Query 15246 GCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACC 15305 | ||||| || ||| | || || ||| | || || || | || || |||| Sbjct 9378 GTAATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACC 9437 Query 15306 TTCCCTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTC 15361 | || || || | | || || | | || |||||||| ||||| ||||| | | || Sbjct 9438 TGCCGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TC 9493 Query 15362 ACAGTCACCAC 15372 || |||||||| Sbjct 9494 ACGGTCACCAC 9504 Score = 89.7 bits (98), Expect = 1e-13 Identities = 231/349 (66%), Gaps = 11/349 (3%) Strand=Plus/Plus Query 11960 ATGCCATCATGGCGCATGCCGCTGCGGAATACCCGCGAGAGTGCTGCGGCGTGGTGGCGC 12019 |||| |||||| | ||||||| | |||||||| || ||||| || ||||| | Sbjct 6521 ATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTTGGTGATTC 6580 Query 12020 AGAAAAGCCGGGTTGAGCGTTATTTCCCCTGCCGCAAC----CTTTCTGAAGAGCCGACA 12075 | || || || || ||| ||| ||||||||| | || | || || Sbjct 6581 AAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCA----CCCACC 6636 Query 12076 GAACATTTTCACCTTTCTCCCGAAGACTACGCAGCTGCCGAAGACTGGGGGACGGTGGTA 12135 || || ||| ||| ||||||||| ||||| |||||||| |||||| | || Sbjct 6637 GAGCAATTTTGCCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTT 6696 Query 12136 GCCATTGTTCACAGCCACCCTGACGCGACGACGCAGGCCAGCGAGCTTGATAAGGCGCAA 12195 ||||| || ||||| ||||| ||||| ||||| ||| ||||| | || |||| || ||| Sbjct 6697 GCCATCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAA 6756 Query 12196 TGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACC 12255 ||||| | | | || ||| |||| ||||||||||| ||| | || ||| Sbjct 6757 TGTGACCTGTCACAAATCCCGTGGGTCATTGCTTCATGGCCGGAGGGTGATATTCGAACC 6816 Query 12256 ATCCAGCCG--CG-CGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGC 12301 || |||| || |||| |||||| ||| || ||||| |||| Sbjct 6817 ATTATGCCGACCGAGGGAGTTAAACCACTGTTGGGCCGCCCGTTCGTGC 6865 >seq2795 Length=11366 Score = 114 bits (126), Expect = 3e-21 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 33338 AATGGCTAACCTACGCAAAGAAGCGCGCGGAAGAGAATGTCAGGTACGTATTTACGGCGT 33397 |||||| || ||||||||||||||||| || ||||||||||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 33398 ATGCAATGGCAACCCTGAAACTACGGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 33457 || || || ||| ||||| |||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 33458 AACTGGAATGAAGCCTGACGACCTGATCGGTGCATGGGCTTGT 33500 | || ||||| || | || ||| | || |||||||| ||| Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGT 3757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123886229635704