Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq10737 188 2e-43 seq2795 120 8e-23 >seq10737 Length=14001 Score = 188 bits (208), Expect = 2e-43 Identities = 1187/1868 (64%), Gaps = 92/1868 (5%) Strand=Plus/Plus Query 14265 TCGTATGCGTTTGGCGG---GGTAACCAACACTGCAGCGCAAGGCTACCCGGTGCCTCTG 14321 || ||||| ||||| || ||| | | || |||| || || |||| || || || Sbjct 7688 TCATATGCCTTTGGTGGCCCGGTTAACTCCATTGCA---CAGGGAAACCCCGTTCCGTTG 7744 Query 14322 CTTTATGGTAAGCGTCGAATCGGCGGAGCGATTATTTCTGCAGGAATTTATGTCGAAGAT 14381 || || |||| || ||||| || || || ||||| || || ||||| | |||||| Sbjct 7745 GGGTACGGCCAGCGCCGCATCGGGGGTGCCATCATTTCGGCGGGCATTTACGCCGAAGAC 7804 Query 14382 CAGCAGTAGATAACTAACC----TTTTT---TCTGGCCACCTTCGGGTGGCTTTTTT-AT 14433 ||||| ||||| | | ||||| || || | | || || ||||||||| || Sbjct 7805 CAGCA----ATAACGCATCATTGTTTTTCAGTCAGGTCGC--TCAGGCGGCTTTTTTTAT 7858 Query 14434 GGGCGCAATATGGCTACAGATAAAGTGTTAAAAGGCCGCAAGGGCGGCAGCTCAAGTTCC 14493 ||| | | ||||| |||| | | | | ||| |||||||||||| |||| | Sbjct 7859 GGGTGAACTATGGG-ACAGC--ATCTTATTCAGGGCAGCAAGGGCGGCAATGAAAGTCCA 7915 Query 14494 CGAACCCCTACCGAACAGCCTGATGATCTGCAATCTGTAGCGAAGGCAAAAATCCTCGTT 14553 || || || |||| ||| ||| |||||||| || | || |||||| | | Sbjct 7916 CGCACGCCGGTCGAATCGCCGGATTCCCTGCAATCGACCTCGTATGCCAAAATCGTATTG 7975 Query 14554 GCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTCACCGGCAAAGATATCTACCTGGACGGA 14613 ||||| ||||||||||||||||| || ||| | ||||| |||||| ||||| Sbjct 7976 GCGCTGGGGGAAGGTGAGTTTGCGGGCGGGCTGAACGGCACTAATATCTTTCTGGATAAC 8035 Query 14614 ACAGCGCTGGAGAATGCTGACGG-CTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCG 14672 || ||||| | | || || | |||| || || ||||| | |||||| || || Sbjct 8036 ACCCCGCTGATTGGTCCCGAGGGTCAGGCAAACTTTGAG-GGGGTGAAGTGGGAATTCCG 8094 Query 14673 CGCGGGAACTCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAG 14732 | | || || | ||| | ||||||| || || |||| ||||| || | | Sbjct 8095 CCCCGGTACGCCCCATCAAGACTATATTCCCGGCATGCCCGCCGTGGAAAATGAACTGAC 8154 Query 14733 CGTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCT 14792 ||| || ||||| || || || || ||| | || | |||||||| || || Sbjct 8155 CGTCGGGACTGA---ATTAAATGAGTCA---TGGGTCAGATCGGTCACCAATACCCAACT 8208 Query 14793 TTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTC---AAACAGGAAGACGACGG 14849 || || || ||||| || | ||||| || || |||||| |||| ||||| Sbjct 8209 GTCGGCGGTGCGCCTTCGGTTATCCTGGCC---GCAATTGCAGAAACAGAAAGAAGACGG 8265 Query 14850 CGATCTGGTGGGTTACTCGG-TCAATTATGCGATTGACCTACAGACGGACGGCGGCACAT 14908 || ||| || || ||| | ||||| |||||| | ||||| || || | | Sbjct 8266 GGACACGGTCGGCTA-TCGCATTGATTATCTGATTGAAGTGGCCACGGATGGGGGGGCGT 8324 Query 14909 GGCAGACGGTACTCAATACCAGC-GTGACCGGTAAAACGACGTCTGGTTATGAGCGCAGC 14967 ||| | ||| || | || ||| || || || || | ||||| || Sbjct 8325 ATCAGGAGTTACCCACG-CTGGCTGTGGATGGCAAGACTACCACCAAATATGAACGGTCA 8383 Query 14968 CACCGTATCGATTTACCGCAGGCTGGCAGCACCTGGACAATACGTCTGCGTAAGATTACC 15027 ||||| |||||||||| | || || |||| | || | || | | Sbjct 8384 CACCGCGTCGATTTACCCAAAGCC--CATT--CTGGCTGGCAGGTGCGGGTTCGC---CG 8436 Query 15028 TCTGACGCC--AACAGCGCG--AA---GATCGGCGACACGATGAT-GCTGCAGAGCTTCA 15079 ||||| || ||||| | || ||| | ||| ||||| | | || || || | Sbjct 8437 CCTGACCCCCAAACAGACCAGTAACCGGATTGCCGATGCGATGGTCGTTGAAGCCATT-A 8495 Query 15080 CCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCG 15139 |||||||||||||||| |||||| | ||||| | ||||| | | | ||| | || | Sbjct 8496 CCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTTG 8555 Query 15140 ACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTA 15199 | | | ||||| | || ||| || || | || || ||||| ||| ||| Sbjct 8556 ATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATTA 8612 Query 15200 TCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTG 15259 |||| || || |||| || || || || ||||| ||| || ||| | || | Sbjct 8613 TCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGGG 8672 Query 15260 CGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTG 15319 | ||||| ||||| ||||| || || || |||||||| | || |||||| | | || Sbjct 8673 CCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCAATG 8732 Query 15320 ACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAAT------ATTGATAAATGGACGC 15373 |||||||| || |||| ||| ||| |||| |||| | | |||||| | Sbjct 8733 ACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGGACC 8792 Query 15374 TTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTA 15433 | || | |||| | | | ||||| ||| ||| || || ||||||||||| | || Sbjct 8793 TGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGG-GATGGAG 8851 Query 15434 CAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCC 15493 | || ||| |||||||| || || |||||| | | ||||||| || |||| Sbjct 8852 CCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTGTCC 8906 Query 15494 TGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA---GATTG 15550 |||| ||| ||| || ||||||| |||||||||| ||||| || | || || Sbjct 8907 TGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGAATG 8966 Query 15551 TGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTAACGTTGTTG 15610 || ||||| || ||||| ||| || |||| | || || ||||| ||||| | Sbjct 8967 TG---CTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGCGGG 9023 Query 15611 GCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGGTTT 15670 |||| || |||||||| || || | ||||| || ||| |||| ||| |||| Sbjct 9024 ACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGGTGA 9083 Query 15671 CATGGTCAGACCCGGGTAACGCTTATGCCGACGCAATGGAGCCGGTATTTGAGCAGGCGC 15730 |||||||| ||| |||| |||| || || |||| |||| || || | | Sbjct 9084 GCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTCAGT 9143 Query 15731 TGGTGGCGCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGT 15790 | || || || | || ||| ||| || || || || ||||||||| ||||| Sbjct 9144 TAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGCAGA 9203 Query 15791 CAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAACAACAAGGATCGCGTTGTT 15849 ||||| | || | ||| ||||| | | |||||| | | || || | || Sbjct 9204 GTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATGGTC 9262 Query 15850 TCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCA 15909 | ||| || |||||||| || |||||| ||| || || || |||| ||||| Sbjct 9263 ACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTGGCG 9322 Query 15910 GACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCG 15967 || | ||| ||| ||||| || |||| || || |||||||| | | | || || Sbjct 9323 GATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGACGTA 9380 Query 15968 TTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGC 16027 ||||| || ||| | || || ||| | || || || | || || ||||||| Sbjct 9381 ATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACCTGC 9440 Query 16028 CTTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTCACA 16083 | || || | | || || | | || |||||||| ||||| ||||| | | |||| Sbjct 9441 CGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TCACG 9496 Query 16084 GTCACCAC 16091 |||||||| Sbjct 9497 GTCACCAC 9504 Score = 98.7 bits (108), Expect = 3e-16 Identities = 236/349 (68%), Gaps = 11/349 (3%) Strand=Plus/Plus Query 12769 ATGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAGTGCTGCGGTGTGGTGGCGC 12828 ||||||| ||| | ||||||| | ||||| || ||| ||||| ||| ||||| | Sbjct 6521 ATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTTGGTGATTC 6580 Query 12829 AAAAAAGCCGTGTTGAACGTTATTTTCCTTGCCGGAATCTTGCCGCTGCGCCGAAGGAA- 12887 |||| || || | ||| | | ||||| ||| ||| | | || | || Sbjct 6581 AAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCACCCACCGAGC 6640 Query 12888 AATTTTGTCCTCTGCCCGGAAGATTACGCAGCTGCTGAGGACTGGGGTACGGTGATCGCC 12947 ||||||| |||| || ||||||||||| || || || ||| || | | ||| Sbjct 6641 AATTTTG-CCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTTGCC 6699 Query 12948 ATCGTTCACAGCCACCCTGACGCCACTACGCAGCCGAGCGAACTGGATAAAGCGCAATGC 13007 ||||| ||||| ||||| |||||||| || ||||| ||| ||||||||| || ||||| Sbjct 6700 ATCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAATGT 6759 Query 13008 GACGCAACGCTTTTACCCTGG--CATATCGTGAGCTGGCCCGAGGGGGATTTACGTACCA 13065 ||| | | | || ||| ||| | | | ||||| ||||| ||| | || |||| Sbjct 6760 GACCTGTCACAAATCCCGTGGGTCATTGCTTCA--TGGCCGGAGGGTGATATTCGAACCA 6817 Query 13066 TTCAGCCG--CGTGGTGAGTT--GCCACTGCTGGAGCGTCCGTTTGTGC 13110 || |||| || || ||||| |||||| ||| || ||||| |||| Sbjct 6818 TTATGCCGACCGAGG-GAGTTAAACCACTGTTGGGCCGCCCGTTCGTGC 6865 >seq2795 Length=11366 Score = 120 bits (132), Expect = 8e-23 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 35738 AATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCGT 35797 |||||| || |||||||||||||| || || ||||||||||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 35798 ATGCAATGGCAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 35857 || || || || ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 35858 AACGGGAATGAAACCTGACGACCTGATCGGCGCATGGGCTTG-TAGTGACTGCCACGCGG 35916 | ||| |||||||| | || ||| | || |||||||| || | ||| || |||| | Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTTCGTG-TTGTCACGATG 3741 Query 35917 AGATCGACCG 35926 | || ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132870308890296