Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq10737 197 4e-46 seq2795 138 3e-28 >seq10737 Length=14001 Score = 197 bits (218), Expect = 4e-46 Identities = 1189/1868 (64%), Gaps = 92/1868 (5%) Strand=Plus/Plus Query 13642 TCGTATGCGTTTGGCGG---GGTAACCAACACTGCAGCGCAAGGCTACCCGGTGCCTCTG 13698 || ||||| ||||| || ||| | | || |||| || || |||| || || || Sbjct 7688 TCATATGCCTTTGGTGGCCCGGTTAACTCCATTGCA---CAGGGAAACCCCGTTCCGTTG 7744 Query 13699 CTTTATGGTAAGCGTCGAATCGGCGGAGCGATTATTTCTGCCGGAATTTATGTCGAAGAT 13758 || || |||| || ||||| || || || ||||| || || ||||| | |||||| Sbjct 7745 GGGTACGGCCAGCGCCGCATCGGGGGTGCCATCATTTCGGCGGGCATTTACGCCGAAGAC 7804 Query 13759 CAGCAGTAGATAACTAACC----TTTTT---TCTGGCCACCTTCGGGTGGCTTTTTT-AT 13810 ||||| ||||| | | ||||| || || | | || || ||||||||| || Sbjct 7805 CAGCA----ATAACGCATCATTGTTTTTCAGTCAGGTCGC--TCAGGCGGCTTTTTTTAT 7858 Query 13811 GGGCGCAATATGGCTACAGATAAAGTGTTAAAAGGCCGCAAGGGCGGCAGCTCAAGTTCC 13870 ||| | | ||||| |||| | | | | ||| |||||||||||| |||| | Sbjct 7859 GGGTGAACTATGGG-ACAGC--ATCTTATTCAGGGCAGCAAGGGCGGCAATGAAAGTCCA 7915 Query 13871 CGAACTCCTACCGAACAGCCTGATGATCTGCAATCTGTAGCGAAGGCAAAAATCCTCGTT 13930 || || || |||| ||| ||| |||||||| || | || |||||| | | Sbjct 7916 CGCACGCCGGTCGAATCGCCGGATTCCCTGCAATCGACCTCGTATGCCAAAATCGTATTG 7975 Query 13931 GCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTCACCGGCAAAGATATCTACCTGGACGGA 13990 ||||| ||||||||||||||||| || ||| | ||||| |||||| ||||| Sbjct 7976 GCGCTGGGGGAAGGTGAGTTTGCGGGCGGGCTGAACGGCACTAATATCTTTCTGGATAAC 8035 Query 13991 ACAGCGCTGGAGAATGCTGACGG-CTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCG 14049 || ||||| | | || || | |||| || || ||||| | |||||| || || Sbjct 8036 ACCCCGCTGATTGGTCCCGAGGGTCAGGCAAACTTTGAG-GGGGTGAAGTGGGAATTCCG 8094 Query 14050 CGCGGGAACTCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAG 14109 | | || || | ||| | ||||||| || || |||| ||||| || | | Sbjct 8095 CCCCGGTACGCCCCATCAAGACTATATTCCCGGCATGCCCGCCGTGGAAAATGAACTGAC 8154 Query 14110 CGTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCT 14169 ||| || ||||| || || || || ||| | || | |||||||| || || Sbjct 8155 CGTCGGGACTGA---ATTAAATGAGTCA---TGGGTCAGATCGGTCACCAATACCCAACT 8208 Query 14170 TTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTC---AAACAGGAAGACGACGG 14226 || || || ||||| || | ||||| || || |||||| |||| ||||| Sbjct 8209 GTCGGCGGTGCGCCTTCGGTTATCCTGGCC---GCAATTGCAGAAACAGAAAGAAGACGG 8265 Query 14227 CGATCTGGTGGGTTACTCGG-TCAATTATGCGATTGACCTACAGACGGACGGCGGCACAT 14285 || ||| || || ||| | ||||| |||||| | ||||| || || | | Sbjct 8266 GGACACGGTCGGCTA-TCGCATTGATTATCTGATTGAAGTGGCCACGGATGGGGGGGCGT 8324 Query 14286 GGCAGACGGTACTCAATACCAGC-GTGACCGGTAAAACGACCTCAGGTTATGAGCGCAGC 14344 ||| | ||| || | || ||| || || || ||| | ||||| || Sbjct 8325 ATCAGGAGTTACCCACG-CTGGCTGTGGATGGCAAGACTACCACCAAATATGAACGGTCA 8383 Query 14345 CACCGTATCGATTTACCGCAGGCTGGCAGCACCTGGACAATACGTCTGCGTAAGATTACC 14404 ||||| |||||||||| | || || |||| | || | || | | Sbjct 8384 CACCGCGTCGATTTACCCAAAGCC--CATT--CTGGCTGGCAGGTGCGGGTTCGC---CG 8436 Query 14405 TCTGACGCC--AACAGCGCG--AA---GATCGGCGACACGATGAT-GCTGCAGAGCTTCA 14456 ||||| || ||||| | || ||| | ||| ||||| | | || || || | Sbjct 8437 CCTGACCCCCAAACAGACCAGTAACCGGATTGCCGATGCGATGGTCGTTGAAGCCATT-A 8495 Query 14457 CCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCG 14516 |||||||||||||||| |||||| | ||||| | ||||| | | | ||| | || | Sbjct 8496 CCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTTG 8555 Query 14517 ACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTA 14576 | | | ||||| | || ||| || || | || || ||||| ||| ||| Sbjct 8556 ATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATTA 8612 Query 14577 TCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTG 14636 |||| || || |||| || || || || ||||| ||| || ||| | || | Sbjct 8613 TCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGGG 8672 Query 14637 CGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTG 14696 | ||||| ||||| ||||| || || || |||||||| | || |||||| | | || Sbjct 8673 CCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCAATG 8732 Query 14697 ACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAAT------ATTGATAAATGGACGC 14750 |||||||| || |||| ||| ||| |||| |||| | | |||||| | Sbjct 8733 ACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGGACC 8792 Query 14751 TTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAATGGTA 14810 | || | |||| | | | ||||| ||| ||| || || ||||||||||| |||| Sbjct 8793 TGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGG-GATGGAG 8851 Query 14811 CAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCC 14870 | || ||| |||||||| || || |||||| | | ||||||| || |||| Sbjct 8852 CCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTGTCC 8906 Query 14871 TGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA---GATTG 14927 |||| ||| ||| || ||||||| |||||||||| ||||| || | || || Sbjct 8907 TGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGAATG 8966 Query 14928 TGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTAACGTTGTTG 14987 || ||||| || ||||| ||| || |||| | || || ||||| ||||| | Sbjct 8967 TG---CTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGCGGG 9023 Query 14988 GCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGGTTT 15047 |||| || |||||||| || || | ||||| || ||| |||| ||| |||| Sbjct 9024 ACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGGTGA 9083 Query 15048 CATGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCCGGTATTTGAGCAGGCGC 15107 |||||||| ||| |||| |||| || ||| |||| |||| || || | | Sbjct 9084 GCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTCAGT 9143 Query 15108 TGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGT 15167 | || ||||| | || ||| ||| || || || || ||||||||| ||||| Sbjct 9144 TAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGCAGA 9203 Query 15168 CAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAATAACAAGGATCGCGTTGTT 15226 ||||| | || | ||| ||||| | | ||||| | | || || | || Sbjct 9204 GTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATGGTC 9262 Query 15227 TCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCA 15286 | ||| || |||||||| || |||||| ||| || || || |||| ||||| Sbjct 9263 ACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTGGCG 9322 Query 15287 GACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCG 15344 || | ||| ||| ||||| || |||| || || |||||||| | | | || || Sbjct 9323 GATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGACGTA 9380 Query 15345 TTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTC 15404 ||||| || ||| | || || ||| | || || || | || || ||||| | Sbjct 9381 ATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACCTGC 9440 Query 15405 CCTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTCACA 15460 | || || | | || || | | || |||||||| ||||| ||||| | | |||| Sbjct 9441 CGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TCACG 9496 Query 15461 GTCACCAC 15468 |||||||| Sbjct 9497 GTCACCAC 9504 Score = 84.2 bits (92), Expect = 6e-12 Identities = 227/345 (66%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 12053 ATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGC 12112 ||||||| ||| | ||||| | | | ||||| || ||| || || || ||||| | Sbjct 6521 ATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTTGGTGATTC 6580 Query 12113 AAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAAC 12172 |||| || || | || ||||| | | || | || ||| || || || || | Sbjct 6581 AAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCACCCACCGAGC 6640 Query 12173 ATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCA 12232 | ||| ||| || ||||| || || || || || ||| || | | |||| Sbjct 6641 AATTTTGCCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTTGCCA 6700 Query 12233 TCGTTCACAGTCACCCTGACGCCACTACGCAGCCGAGCGAACTGGATAAAGCGCAATGCG 12292 |||| ||||||||||| |||||||| || ||||| ||| ||||||||| || ||||| | Sbjct 6701 TCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAATGTG 6760 Query 12293 ACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACCATCC 12352 || | | | || ||| |||| ||||||||||| ||| | || ||||| Sbjct 6761 ACCTGTCACAAATCCCGTGGGTCATTGCTTCATGGCCGGAGGGTGATATTCGAACCATTA 6820 Query 12353 AGCCG--CG-CGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGC 12394 |||| || |||| |||||| ||| || ||||| |||| Sbjct 6821 TGCCGACCGAGGGAGTTAAACCACTGTTGGGCCGCCCGTTCGTGC 6865 >seq2795 Length=11366 Score = 138 bits (152), Expect = 3e-28 Identities = 146/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 36185 AATGGCTAATCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 36244 |||||| ||||||||||||||||| || || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 36245 ATGCAATGGTAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 36304 || || ||||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 36305 AACGGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTGTAGCGCGT-GTCACGATG 36363 | ||| ||||| || | || ||| | || |||||||| ||| || || ||||||||| Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTT-CGTGTTGTCACGATG 3741 Query 36364 AAATCGACCG 36373 |||| ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130128373020928