Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq10737 159 1e-34 seq4764 82.4 2e-11 seq2795 82.4 2e-11 >seq10737 Length=14001 Score = 159 bits (176), Expect = 1e-34 Identities = 592/917 (65%), Gaps = 33/917 (4%) Strand=Plus/Plus Query 16178 ACAGAGGTCATTGACGCCAAACTGCGTTATCCAAACACCGCGCTGTTGTACATCGAATTC 16237 || ||||| |||||||| |||||| |||| || | ||||| | |||| | | | || Sbjct 8495 ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTT 8554 Query 16238 GACTCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16297 || | | ||||| | || ||||||||| | ||||| ||||| | ||| | Sbjct 8555 GATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATT 8611 Query 16298 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGG 16357 ||||| || ||||||| ||||| ||||| ||||||||| || ||| | ||| Sbjct 8612 ATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGG 8671 Query 16358 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGC 16417 || ||||| ||||||||||| || ||||| || ||||| | || || ||| || | | Sbjct 8672 GCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCAAT 8731 Query 16418 GACCGCTTTGGGCTGGGCAATCGCCTGACGGCGGCCAAT------ATTGATAAATGGACG 16471 ||||| || | | || | || ||| || | ||| | | |||||| Sbjct 8732 GACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGGAC 8791 Query 16472 CTTTACCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGC 16531 || |||| | || | | || || |||||||| || ||||| |||| | || Sbjct 8792 CTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAG------GGGGG 8845 Query 16532 ACTGAGCCTCGCTATACCTGCAACGTGTATGTGCAGGAGAGGAATGACGCCTATACCGTG 16591 | ||||| | | |||||||| || ||| | ||| | | ||||||| || || Sbjct 8846 ATGGAGCCGAGACACACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTGTC 8905 Query 16592 TTACGAGATTTTGCGGCGATATTCCGGGGCATGACTTACTGGGGTGGCGATCAAATCGTT 16651 | || ||| ||| | || ||| |||||||| | ||||| | || | || | Sbjct 8906 CTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGAAT 8965 Query 16652 GCGCTGGCGGATATGCCCCGCGATGTGGATTACAGCTACACGCGTGCAAACGTGGTTAAT 16711 | ||||||||||||||||||| ||||||| | || ||| || || |||||| | Sbjct 8966 GTGCTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGCGGGAC 9025 Query 16712 GGGCGCTTTACCTATTCGGGCAGCACCACGAAAACCCGCTATACCACAGCACTGGTTTCC 16771 || ||||||||||| | || | |||||||| || |||| || |||| | Sbjct 9026 GGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGGTGAGC 9085 Query 16772 TGGTCCGATCCGGGTAATGCCTACGCGGATGCGATGGAGCCTGTATTTGAGCAGGATCTC 16831 ||||| |||||| || | || ||||||| |||| | || || || | ||| Sbjct 9086 TGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACC-----CTC 9140 Query 16832 -GTTGCTCGCTTTGGCA-CA----AATCAGCTCGAAATGACAGCCATTGGTTGTACCAGA 16885 ||| | || || | || || ||| || || || || ||||| || ||| | Sbjct 9141 AGTTAAT-GCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGG 9199 Query 16886 CAGTCAGAAGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAACAACAAGGATCGCGT 16944 ||| || || | || | ||| ||||| | | |||||| | | || || | Sbjct 9200 CAGAGTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGAT 9258 Query 16945 TGTTTCGTTCGATGTCGGGCTGGACGGAAACATACCGCAGCCTGGCTATATCATCGCTGT 17004 || | || || |||||||| || || ||| ||| || ||||| |||| || Sbjct 9259 GGTCACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGT 9318 Query 17005 GGCAGACG-AGCTGCTT-TCCGGAAAGGTGATGGGAGGGCGTATCAGCGCGGTTAATGGT 17062 ||| || | ||| ||| ||||| || |||| |||||||||||||||| | |||| Sbjct 9319 GGCGGATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGA 9376 Query 17063 CGCGTTATCACGCTTGA 17079 || ||||||||| || Sbjct 9377 CGTAATATCACGCTGGA 9393 Score = 82.4 bits (90), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 14071 CCCGAAGATTACGCAGCGGCAGAAGACTGGGGGACCGTGGTGGCCATTGTTCACAGCCAT 14130 |||||||||||||| || ||||| |||||| | || ||||| || ||||| || Sbjct 6655 CCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTTGCCATCGTCCACAGTCAC 6714 Query 14131 CCTGATGCGACGACGCAGGCCAGCGAGCTGGATAAGGCACAGTGTGATGCAACGCTGCTG 14190 || || || ||||| ||| ||||| | ||||||| ||||| ||||| | | | Sbjct 6715 CCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAATGTGACCTGTCACAAATC 6774 Query 14191 CCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACCATTCAGCC-ACGCGGGGA 14249 || ||| |||| ||||| ||||| ||| | || |||||| ||| || |||| Sbjct 6775 CCGTGGGTCATTGCTTCATGGCCGGAGGGTGATATTCGAACCATTATGCCGACCGAGGGA 6834 Query 14250 GCT--GCCATTGCTGGAGCGTCCGTTCGTGC 14278 | | ||| || ||| || |||||||||| Sbjct 6835 GTTAAACCACTGTTGGGCCGCCCGTTCGTGC 6865 >seq4764 Length=15780 Score = 82.4 bits (90), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 12431 GCGCTGGGATTTGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAGCCAGCAGGT 12490 || || |||||||| || || ||||| ||||| || || ||||| ||||| |||| Sbjct 15064 GCTCTTGGATTTGCTGGAGGAGGTTACACCGGAAATGGTGGCAAATACGAGCCTAAAGGT 15123 Query 12491 GTCGTTCACCGTGGTGAGTTTGTTTTCACCAAAGAGGCTAC-CAGCCGGATCGGCGTCGG 12549 || ||||| |||||||||| || |||||||||||| | || ||| || | || |||| Sbjct 15124 GTGGTTCATGGTGGTGAGTTCGTGTTCACCAAAGAGTCAACTCAG-CGTTTAGGTGTCGA 15182 Query 12550 CAATCTTTACCGGATGATG 12568 || || || ||| | ||| Sbjct 15183 TAACCTCTATCGGCTAATG 15201 >seq2795 Length=11366 Score = 82.4 bits (90), Expect = 2e-11 Identities = 188/280 (67%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 33436 TTCCCGCCATCTGTCTGACCAATGGCATACAGTTTCCCATCAACTATGCGTTTGTTGTTC 33495 |||| |||||| ||| ||| || || | ||| ||||| || || ||| | ||| Sbjct 11299 TTCCATCCATCT---TGATTAATTGCGTAGACTTTTCCATCTACAATTTTTTTATCGTTA 11243 Query 33496 GTATCGACGGCTACAGTCGTACCATCCGGTATCACAGGTTCCATGCTGTCGCCAGTAGCA 33555 || | || || || | |||| ||||||| ||||||||||| || || | || Sbjct 11242 CAATTAATAGCAACGGTGGCTCCATTAGGTATCAGTGGTTCCATGCTATCCCCTCTCGCC 11183 Query 33556 GGGAAACACAGGATGCCAGACCCATCTGTGTTAGCTCCAACGCGGCGGAGGGTTGCCTTT 33615 || |||||||| | || | ||||| ||||| ||||| || | | | || || || Sbjct 11182 GGAAAACACAGCACTCCGGTGCCATCAGTGTTGGCTCCTACTCTCCTAAAAGTGGCTTTG 11123 Query 33616 GAGAACCTGAGCTTAAAACCATTGTGATCTTCG-CTGTGTACGCGTCCATCGCCACACGC 33674 || || || | |||||| || |||| || || | || || ||| ||||| || Sbjct 11122 GAAAATCTCAACTTAAAGCCGTTGTAGTCCACGTCAATGCAC-TTACCACTACCACAAGC 11064 Query 33675 AAATTCAATATCCTTAAGAAATGGCACTTCAACCTCATCA 33714 ||| || ||||| || | |||||| || || || |||||| Sbjct 11063 AAACTCTATATCTTTCAAAAATGGAACCTCTACTTCATCA 11024 Score = 80.6 bits (88), Expect = 8e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40721 TGATTTGCTGATCTCGGTTGGTGACCTTGTTGACCGCGGCGCGGAAAACGTCGAGTGCCT 40780 |||||| ||||| || || || ||||| ||||| | || | ||| ||||| || || Sbjct 4996 TGATTTACTGATATCAGTAGGCGACCTGATTGACAGGGGGGATCGAAATGTCGAATGTCT 4937 Query 40781 GGATCTGATTACTATGCCGTGGTTCAGGGCAGTGCGCGGTAACCATGAGCAGATGATGGT 40840 || ||||| || |||||||||||||| || || || || |||||||||||| | | Sbjct 4936 CGACCTGATAACGCAACCGTGGTTCAGGGCGGTTCGGGGCAATCATGAGCAGATGGCGAT 4877 Query 40841 TGATGGGCT 40849 |||| ||| Sbjct 4876 AGATGCGCT 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145025051443072