Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq4423 116 7e-22 seq11062 113 9e-21 seq6114 109 1e-19 >seq4423 Length=667 Score = 116 bits (128), Expect = 7e-22 Identities = 159/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 11171 CTTGGCACCAACGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATAT 11230 || || ||||||| || ||||| ||| |||| ||||||| | || |||| |||| Sbjct 3 CTGGGGACCAACGCCCGGACCGCCCAGGGCTATCACGGCAACTTCTACTTCGACGAATTC 62 Query 11231 TTCTGGATACCGAAATTCCAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAA 11290 ||||||| || ||| |||| || |||||||||||||||||| || |||| || Sbjct 63 TTCTGGACCTTCAAGTTCAAGGAACTCAACAAGGTCGCCAGCGGCATGGCGATGCAGAAG 122 Query 11291 AAGTGGCGCACCACCTACTTTTCCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTC 11350 ||| ||| |||||||| || ||||| |||||| || | ||| || || | ||| Sbjct 123 CAGTACCGCCGGACCTACTTCTCGACGCCATCGAGCATGGCACACGAGGCCTACACCTTC 182 Query 11351 TGGTCGGGCGAGCTGTTCAACAAAG-------GGCGGCGCAGC 11386 ||| | ||||||| |||||||| | ||||||||||| Sbjct 183 TGGACCGGCGAGCGCTTCAACAAGGGCAAACCGGCGGCGCAGC 225 Score = 113 bits (124), Expect = 9e-21 Identities = 192/274 (70%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 11498 GGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATACAGCCCGTCGGAATACCAG 11557 |||||| | ||||| ||||| ||| |||| ||| || ||| | | || | |||| Sbjct 393 GGCTGTGATCTGTTCGACCTGGACGAGCTGAGGCTTGAGTACGACGCCGAGGCCTTCCAG 452 Query 11558 AACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGCGTGTTCCCGTTCGCCGAGCTG 11617 |||||||||||||| |||| | ||||| | ||||||| | ||||| | || | || Sbjct 453 AACCTGCTGATGTGCCAGTTCATCGACGACGGGGCGAGCATCTTCCCCCTGGCGATGTTG 512 Query 11618 CAGACCTGCATGATCGACAGCCTGGAGGAATGG--AG-CGACTTTAACCCGTACCTGCCG 11674 ||| |||||||| | ||||| ||| ||| || |||| || || | | |||| Sbjct 513 CAGCCCTGCATGGTGGACAGTTGGGACCTCTGGGCAGAGGACTACAAACCCTTC--GCCG 570 Query 11675 --CGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCGTCGCACACCGGCGACA 11732 || ||||| | | | |||| ||||||| | ||||| |||||| || | | |||||||| Sbjct 571 CACGGCCGTTCGGTGATCGCCAGGTCTGGGTGGGCTATGACCCGGCGGAAAACGGCGACA 630 Query 11733 GCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGT 11766 |||| ||| | || ||||| || || |||| Sbjct 631 GCGCGGGCATGGTGGTAATCGCTCCCCCTATGGT 664 >seq11062 Length=2017 Score = 113 bits (124), Expect = 9e-21 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 26346 ATTTTTGCCCGCAGGCCCAGCGCTCGGGCGGTGGCGTACGCGGTTTCGGACTGATTGGCG 26405 || || |||||||| || || || |||||| |||| | || || | | |||| | Sbjct 1 ATCTTCGCCCGCAGACCTAGGGCGCGGGCGACGGCGGATGCTTTTGCTGTTGCGTTGGTG 60 Query 26406 GTGGTGTTCCAGCTGATAAAGTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTC 26465 |||||||||||| | ||||| |||||||| |||||| ||| || | ||||||| Sbjct 61 GTGGTGTTCCAGTTTTGGAAGTCAGGCCAGATCACCATTGCTTCTCGTGCACCGAAGTTC 120 Query 26466 TCGCGGTATGCCATCGCCTCGGAAAGGGTTTTGCAGCCCCATGCCGACACATAGGCGAAG 26525 |||||||| || | || || ||| |||| | |||| || |||||| |||| Sbjct 121 TCGCGGTAGGCGACGGCTTCCTCTTTGGTCTTGCTGTCCCAGGCGCTGACATAGCAGAAG 180 Query 26526 GCGCGCAGCTGCTGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCC 26585 || |||| |||||| | || | | || ||||| | || ||| |||||| || Sbjct 181 GCCCGCAACTGCTGGCCGATCGAGACCAGGGCGGTGGCTACCGGCAGGCTGTCGAGGCCT 240 Query 26586 GGCACGCCGAGAATGCGCGG 26605 |||||||| ||||||||||| Sbjct 241 GGCACGCCAAGAATGCGCGG 260 Score = 109 bits (120), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 26733 ACGACGGTGACG---GGTTTGGCCTGGTCAGCGATCGCCTGCAGCGCGGCGGCCAGCGTG 26789 || ||| ||||| || |||| |||||| ||||| ||||| || |||| |||| ||| Sbjct 483 ACAACGATGACGTAGGGCTTGGTCTGGTCGGCGATGGCCTGGAGACTGGCGCCCAGGGTG 542 Query 26790 CCTTTTTTACCGGCTTTGCCAATGGCCGACAGCACGTTGGTCAGCAGCACCGGCTCATTG 26849 || || | |||||||| || | || | | | |||||||||||||| ||||| || | Sbjct 543 CCCTTGGTGCCGGCTTTACCGACCGCGGTCTGAACGTTGGTCAGCAGGACCGGGGTATCG 602 Query 26850 AGCGGGAAGGCGGCCGCATCGGCATCGTCTGCGGTACAGACCATGCCGACAATGGCCGTG 26909 |||||||| || || |||||| ||||| || || || | || ||||| || || ||| Sbjct 603 AGCGGGAATGCCAGCGGATCGGCGTCGTCGGCAGTGCAAATCAGGCCGATAACAGCGGTG 662 Query 26910 G 26910 | Sbjct 663 G 663 >seq6114 Length=556 Score = 109 bits (120), Expect = 1e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 3133 CACCGTGACGCGATCGGCCACCGGGCGCACGTTCTCATCGTTCAGCGCGGCATCCACCAC 3192 ||||||||| |||||| | | ||| ||||||| |||||| || || || || | ||| Sbjct 362 CACCGTGACCCGATCGCCTAGCGGTCGCACGTCCTCATCATTGAGGGCCGCGGCGACCGT 303 Query 3193 GGCCAGCAGGTCGGATGGGGCTTCGCCGTTACCCTCACGCGACAGCACCGTGACGGTGAC 3252 |||||||| || | | ||| |||||| ||| || | ||||||||| || ||||| Sbjct 302 CGCCAGCAGTTCAGGCGCAGCTGCGCCGTCACCTTCCAGGCTCAGCACCGTAACCGTGAC 243 Query 3253 GCAGGCGGGCGACGGGCTGATGGCCGAGGCATCCGCCACGCGG 3295 |||||| || |||||||| |||| ||| |||||||| ||| Sbjct 242 GCAGGCCGGTGACGGGCTTTCGGCCTCGGCGTCCGCCACCCGG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94467209427024