Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6327 176 5e-39 seq2468 98.7 1e-15 >seq6327 Length=14581 Score = 176 bits (194), Expect = 5e-39 Identities = 465/707 (66%), Gaps = 31/707 (4%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| | ||| || ||||||||||| |||||||| || | ||| || || || Sbjct 6841 GAAACTGGTATACCGTACATGCTTTACAAAGATGCTTGCAATAGAAAGTCGAATCAGAAA 6900 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | ||||| || ||| | || ||||| || |||||||| | ||||| | | Sbjct 6901 AATCTTGGAACTATTAAGTGTTCCAATCTCTGTACGGAAATCGTGCAGTACTCGTCTCCT 6960 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT--TCCAAAGTATGTCAATGAAG 76082 ||||| |||||||||||||| || || || || || || | | ||||| |||| Sbjct 6961 GATGAAGTCGCTGTTTGCAATTTAGCTTCGATTGCTCTGAACCGA--TTCGTCAAAGAAG 7018 Query 76083 AGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142 | | ||||||||||| ||||| ||||||| ||| || ||| |||| || || | Sbjct 7019 ACA---AAACTTTTGATTACGAAAAGCTTCATGCAATTACCAAGGTTGTCACACGTAACC 7075 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATA 76199 | ||| | | || ||| | ||||| ||||| ||| || ||| || || || | Sbjct 7076 TTAACAAAATTATCGACTGCAATTTCTATCCGGTTCCCGAAGCTG---AAACATCAAACA 7132 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCC 76259 ||| || | || ||||| | || ||||||||| | || |||| || || ||| | Sbjct 7133 AGCGTCATCGCCCAATTGGAATCGGAGTTCAAGGTTTAGCAGATGCTTTCATGTTGATGC 7192 Query 76260 GCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGT 76319 | || | || | | |||| || | || | |||||||||||||| | Sbjct 7193 GGTATCCGTTCACTAGTCCTCAAGCTCGTGATCTCAACAAGAGAATCTTTGAAACCATTT 7252 Query 76320 ATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379 | || | | || ||||| | |||||| ||||| | ||| | |||||||| | Sbjct 7253 ACCATGGTGCTCTTGAGGCATCCTCTGAATTAGCTGAGAAATATGGTACTTATGAGACGT 7312 Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGG------GAAGGT- 76432 || || ||||| | |||||| | ||||| | ||| |||||| |||| | Sbjct 7313 ACGAAGGGTCTCCTGTAAGCCAAGGAATTCTTCAATATGAAATGTGGAATACAGAAGATG 7372 Query 76433 GAAACCAAGCTC-----------AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGG 76481 |||| | || || | | | | |||| | ||| ||||| ||| | Sbjct 7373 GAAAGCCAGTTCTTCCTACAGATCAGTGCAATTGGGTAGCTCTGAAGGAGAAAATCGCGA 7432 Query 76482 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 76541 || | || | |||||||||||| | | || ||||||||||| |||||||| || |||| Sbjct 7433 AGCATGGAGTGCGTAACAGTCTTCTTCTCGCCCCAATGCCAACGGCCTCCACAGCTCAAA 7492 Query 76542 TCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 || | || || ||||||| |||| || ||||| | ||||||||| Sbjct 7493 TCCTTGGAAACAATGAATCGATTGAGCCCTACACGTCCAACATCTAC 7539 Score = 107 bits (118), Expect = 2e-18 Identities = 245/364 (67%), Gaps = 15/364 (4%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| ||| || | | ||| || | || ||||| ||||| || ||||| ||||| | Sbjct 6323 TTTGGGAGGAAATCGTTACATCGCAAATTGAAACTGGTACACCTTACATGCTCTACAAAG 6382 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 ||||||| || | ||| ||||| || ||| | ||||| || || | || ||||| | Sbjct 6383 ATGCTTGCAATAGAAAGTCGAACCAGAAAAATCTTGGAACTATTAAATGTTCCAATCTCT 6442 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 |||| ||||| | ||||| | | ||||| |||||||||||||| || || | Sbjct 6443 GCACTGAAATCGTGCAGTACTCGTCTCCTGATGAAGTCGCTGTTTGCAATTTAGCTTCGA 6502 Query 76056 TCGCCCT--TCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCA 76113 | || || || | | ||||| ||||| | || |||||||| ||||| ||||| Sbjct 6503 TTGCTCTGAACCGA--TGCGTCAAAGAAGACA---AAACCTTTGATTACGAAAAGCTTCA 6557 Query 76114 TGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCC 76173 || || || ||| || | || || || ||| | |||||| | |||| ||||| Sbjct 6558 TGCGATTACCAAGGTTATCACACGTAACCTTAACAAGATTATTGACTGCAATTACTATCC 6617 Query 76174 CGTT---GAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTC 76229 ||| || || ||||| || || | ||| || | || ||||| | || |||| Sbjct 6618 GGTTCCCGAAGCT----GAAAGATCAAACAAGCGTCATCGCCCAATTGGAATCGGAGTTC 6673 Query 76230 AAGG 76233 |||| Sbjct 6674 AAGG 6677 >seq2468 Length=4028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/422 (66%), Gaps = 14/422 (3%) Strand=Plus/Minus Query 64802 TGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTTTGCGG 64861 |||| || ||||||| || |||||||| || || ||| || | | ||| | Sbjct 3538 TGGCGTTTTTTGCTGCTTCAGATGGAATCGTAAACGAAAATCTCGTTGAGCGATTTACAC 3479 Query 64862 ATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCAA--TGCCAT--AATGAA 64917 | |||||| |||| ||||||| ||| |||||| | || |||| | || ||| Sbjct 3478 AGGAAGTGAAGATGCCTGAAGCGCTCTCGTTCTACAGTTTCCAGATTGCCGTCGAAGGAA 3419 Query 64918 ATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAA 64977 ||||| ||| | |||||||| |||| || |||| ||| ||| | |||| Sbjct 3418 ----TTCATTCCGAGATGTATTCAAAGATGATCGAAGCATACGTTACCGATCTAACTGAG 3363 Query 64978 AAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGG 65037 | ||| | | ||| | || || ||| | || || ||| ||||||| || | ||| Sbjct 3362 AGGAACACGCTCTTTAATGCTATTCAAGAGTTTCCCTGCATTAAGAAGAAAGCCGACTGG 3303 Query 65038 GCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCG 65097 || | |||| ||| ||| | || || | ||| | | || ||||| Sbjct 3302 GCTCTCCGATGGATTGGAGATAAGAATGCTTCGTTTGGAATTCGCGTGATCGCTTTTGCT 3243 Query 65098 TGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCG 65156 ||||| || ||||| |||||||| || || ||| || |||| ||||||||||||||| Sbjct 3242 GCCGTGGAAGGAATCTTTTTCTCCGGATCGTT-TGCTGCCATTTTTTGGTTGAAGAAGCG 3184 Query 65157 GGGTCTCATGCCAGGCCTATGCTTCTCA--AATGAACTTATTTCCCGAGATGAGGGTCTC 65214 || |||||||| || || || || |||||||| ||||| |||||||| || ||| Sbjct 3183 TGGACTCATGCCTGG--GTTGACTCACAGCAATGAACTAATTTCACGAGATGAAGGACTC 3126 Query 65215 CA 65216 || Sbjct 3125 CA 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596463321125760