Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7750 107 3e-18 seq13049 102 1e-16 seq8226 98.7 2e-15 seq10950 84.2 4e-11 >seq7750 Length=8304 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || |||||||| || || | |||||||||||| || |||||||| || ||||| || ||| Sbjct 3068 TTACCGGCAAAGATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAATCTTG 3127 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | |||| ||||| ||||||| || || || ||||| || || ||||| || Sbjct 3128 GCCTTGACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTACCAGTC 3187 Query 193338 AGCGTTTTTACAAATATTTGCATTTTA 193364 || ||||| || || || |||||| || Sbjct 3188 AGGGTTTTGACGAAGATCTGCATTGTA 3214 Score = 96.9 bits (106), Expect = 6e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 779 CGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCG 838 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || |||||||| || || || | || ||||| ||||| ||||||||||| Sbjct 839 TCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTG 898 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | |||| || || ||||| | || || || ||||| || Sbjct 899 TCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATG 958 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || |||||| Sbjct 959 GTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCATT 994 >seq13049 Length=11502 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||||||||| || || |||| ||||||||| ||||| ||||| ||||| Sbjct 10465 ATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTT 10406 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || |||| ||| | || ||| | || || | || ||||| ||||| || Sbjct 10405 GTCCTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGAT 10346 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || ||||| Sbjct 10345 CGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 10310 >seq8226 Length=1064 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || || ||||| | || | ||| || |||||| Sbjct 776 AATTTGCATGCCACCACGAAGACGGAGAACGAGATGGAGGGTTGACTCCTTCTGAATATT 835 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || || ||||||||||| || || |||| ||| || Sbjct 836 GTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCGCTGCTG 895 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || |||| || | ||| ||| |||| || Sbjct 896 GTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGCTATCAGA 955 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| ||||| || |||||||| || | ||| || ||||| |||||||| Sbjct 956 GGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGACAAAGATTTGCAT 1012 >seq10950 Length=25243 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193213 ATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTA 193272 ||||| | ||||| ||||| | | ||||| || ||||| |||||||||||||| || | Sbjct 24609 ATTGTATACCGGCGAAAATAAGGCGTTGTTGGTCTGGAGGGATTCCTTCTTTATCCTGGA 24668 Query 193273 TTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTAC 193332 |||||| || | || ||| || || || || ||||| || || || ||||| | Sbjct 24669 TTTTGGCCTTGACGTTCTCAATGGTGTCTGACCCTTCGACTTCGAGGGTGATGGTTTTTC 24728 Query 193333 CTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || | || || ||||| ||||||||| Sbjct 24729 CGGTCAAAGTCTTGACAAAGATTTGCATT 24757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899494126568640