Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12388 113 7e-20 seq13049 104 3e-17 seq10950 96.9 5e-15 seq10049 93.3 6e-14 seq7750 91.5 2e-13 >seq12388 Length=21549 Score = 113 bits (124), Expect = 7e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || || | ||||| ||||| || || |||||||||||| Sbjct 15278 AACATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACGATCACCCTAGAAGTCGAAGCC 15337 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| |||||| || ||||| ||||| || ||||| || |||||||| Sbjct 15338 TCTGATAGTATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGAC 15397 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | | || | ||||| |||||||| |||||| | | || |||| || || Sbjct 15398 CAGCAACGTCTTATCTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACCCTATCTGACTAC 15457 Query 156000 AATAT 156004 ||||| Sbjct 15458 AATAT 15462 >seq13049 Length=11502 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || || ||||| ||||||||||||| ||| Sbjct 10082 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACAATTACCTTAGAAGTCGAAGCCTCT 10141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| ||||| || || || ||||| || || ||||| || Sbjct 10142 GATAGTATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAG 10201 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||| |||||| | | || | || ||||| || Sbjct 10202 CAACGTCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAAC 10261 Query 156003 AT 156004 || Sbjct 10262 AT 10263 >seq10950 Length=25243 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| |||||||| || || | |||||||||| || Sbjct 24757 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAAACCATCACCCTCGAAGTCGAAGGGTC 24698 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || ||||| || ||||||||||| || |||||||| || Sbjct 24697 AGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAAGGAATCCCTCCAGACCA 24638 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 |||| | | |||| ||||||| Sbjct 24637 ACAACGCCTTATTTTCGCCGGTA 24615 >seq10049 Length=10599 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155861 TACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAA 155920 ||| ||||||||||||| ||||||| |||| |||||| ||| ||||| |||||||| Sbjct 8580 TACCTTAGAAGTCGAAGCCTCTGATAGTATTGAAAACGTCAAAGCCAAAATCCAAGATAA 8521 Query 155921 AGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATAC 155980 || || || || ||||| || || ||||||| | ||| || || || || |||||| Sbjct 8520 GGACGGAATCCCGCCAGACCAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGG 8461 Query 155981 CAGAACTTTATCAGATTATAATAT 156004 | | || | || || || ||||| Sbjct 8460 CCGCACCCTGTCTGACTACAATAT 8437 >seq7750 Length=8304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || ||| | || |||||||| || || | || ||||||| || Sbjct 1222 AATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTC 1163 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || || || || || ||||| ||||| || |||||||| || Sbjct 1162 CGACACAATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCA 1103 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||||| ||||||||||||||| | ||| | || || || || Sbjct 1102 GCAACGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACTCTTTCTGACTACAA 1043 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 1042 CATCCAGAAGGAGTCGACCCTTCAT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731741617003200