Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7750 98.7 2e-15 seq13049 96.9 7e-15 seq8226 95.1 2e-14 seq10049 89.7 1e-12 seq12388 86.0 1e-11 >seq7750 Length=8304 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||| || | |||||||||||| || |||||||| || ||||| || || Sbjct 3068 TTACCGGCAAAGATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAATCTTG 3127 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| |||| || || | ||| || || ||||| ||||| |||||||| Sbjct 3128 GCCTTGACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTACCAGTC 3187 Query 192514 AATGTTTTAATAAATATCTGCATTTTA 192540 | ||||| | || ||||||||| || Sbjct 3188 AGGGTTTTGACGAAGATCTGCATTGTA 3214 >seq13049 Length=11502 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| | || | ||| || ||| || |||||| Sbjct 7423 ATACCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCA 7364 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | |||||| ||||||||||| | | || || || || Sbjct 7363 GAGAGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGA 7304 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || ||||| || || || || ||||| | ||| Sbjct 7303 GGAATGCCCTCTTTGTCCTGGATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCG 7244 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| || ||||||||||| | || || | || |||||||| || Sbjct 7243 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTT 7191 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | ||| | ||||| ||| || || || Sbjct 10083 ATGCCACCACGGAGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCG 10024 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || | || || | |||||| ||||||||||| | | || || || || Sbjct 10023 GACAAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGA 9964 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||| || || |||||| ||| || || || ||||| | ||| Sbjct 9963 GGGGTTCCTTCTTTGTCCTGGATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCG 9904 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| || ||||||||||| | || || | || |||||||| || Sbjct 9903 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTT 9851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | ||| | || || || || || ||| Sbjct 10539 ATGCCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCA 10480 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | |||||| || || ||||| |||| ||||||||| || Sbjct 10479 GACAGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGA 10420 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || || || ||| || || || ||||| | ||| Sbjct 10419 GGGATTCCCTCTTTGTCCTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCG 10360 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| | || || | || |||||||| Sbjct 10359 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 10310 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | ||| | || | ||| || ||| || |||||| Sbjct 10311 ATGCCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCA 10252 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | | || || || || Sbjct 10251 GAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATAAGACGTTGCTGGTCTGGG 10192 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| ||| || || ||| ||| || | ||| Sbjct 10191 GGGATTCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATACTATCAGAGGCTTCG 10132 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| || || ||||| | || || | ||| |||||||| Sbjct 10131 ACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 10082 >seq8226 Length=1064 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | ||| | || | ||| || ||||| |||||| Sbjct 783 ATGCCACCACGAAGACGGAGAACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAATCA 842 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| ||||| || || ||||| |||| ||| || || || Sbjct 843 GAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGG 902 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || || || || ||| || | ||| Sbjct 903 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGCTATCAGAGGCTTCG 962 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| || || || | ||| || ||||| Sbjct 963 ACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGACAAAGATTTGCAT 1012 >seq10049 Length=10599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || | ||| | || | ||||| |||||| || ||||| Sbjct 8392 CCGCCACGAAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAC 8451 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | |||||| ||||||||||| |||| ||| || || || || Sbjct 8452 AGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGCGGG 8511 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || |||||||| ||||| ||| || || ||| ||| || | ||| ||| Sbjct 8512 ATTCCGTCCTTATCTTGGATTTTGGCTTTGACGTTTTCAATACTATCAGAGGCTTCGACT 8571 Query 192490 TCTA 192493 |||| Sbjct 8572 TCTA 8575 >seq12388 Length=21549 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || ||||||| || || |||| || | || || || || ||||| | | Sbjct 15462 ATATTGTAGTCAGATAGGGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAGATAAGACGT 15403 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || |||||||| || ||||| ||||| || || || ||| | Sbjct 15402 TGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATACTA 15343 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| |||||||| || || ||||||||||| | || || | ||| |||||| Sbjct 15342 TCAGAGGCTTCGACTTCTAGGGTGATCGTTTTACCAGTGAGGGTCTTTACAAAGATCTGC 15283 Query 192535 ATTTT 192539 || || Sbjct 15282 ATGTT 15278 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| |||||||| | || || |||| || | || || || || ||||| | | | Sbjct 15971 ATATTGTAATCAGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGC 15912 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || ||||| || || || || ||||| ||| || || || Sbjct 15911 TGTTGATCGGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGCTG 15852 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| ||||| || || || ||||||||||| || || || | ||| || ||| Sbjct 15851 TCTGAGGCTTCGACTTCGAGGGTGATCGTTTTACCAGTCAACGTCTTGACAAAAATTTGC 15792 Query 192535 AT 192536 || Sbjct 15791 AT 15790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984300230260200