Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6327 152 2e-31 seq2527 107 6e-18 seq5830 89.7 2e-12 >seq6327 Length=14581 Score = 152 bits (168), Expect = 2e-31 Identities = 316/465 (68%), Gaps = 4/465 (1%) Strand=Plus/Minus Query 156037 ACATAGCAAAACTACCATTCCTC-TTGCCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 |||||| ||| ||| || ||| || || || ||||| || || |||||||| |||||| Sbjct 4581 ACATAG-AAATCTAACAAACCTTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTG 4523 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGA 156154 | || | |||||||| || | |||||| || || ||||||||||| |||| || | Sbjct 4522 TACACTCGGAGCATAGGGATTAAACCATTCGATGTTCCATTGGTTCCAGCGATCATT-GT 4464 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 ||||||| ||||| ||| || ||| ||||||||||||| | || ||||| | Sbjct 4463 TCCAGATGCGCGAATGCAATGCGCATTTAGACCAATACCACCTGCTGACTTCGAAATAAG 4404 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 || || | | | ||| ||| |||| || ||||| ||||| || | ||| | || || Sbjct 4403 GGCACACTGCCAGAGAGTTTTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAG 4344 Query 156275 ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 |||| || || | ||| ||| ||||| || ||||| |||||||| | ||||| Sbjct 4343 GAAGCAAGAGCTCATTTGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATG 4284 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCC 156394 | | || | | ||||| ||| ||| || || || || | || | Sbjct 4283 AGTGAACCAGCGCTCGGACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTT 4224 Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454 |||||| | | || ||| | ||| || ||| ||||||||||| |||| | |||||| Sbjct 4223 GTGAATTCCAACAGCGACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATC 4164 Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| | | |||| || |||| |||||| || |||||||| Sbjct 4163 CATTTTTAACAAATATGACCGCTCCAAAGTTTTGAAACCGAAATA 4119 Score = 149 bits (164), Expect = 2e-30 Identities = 297/440 (68%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || |||||||| || || || ||||| |||||| | || | ||||||||||| | | Sbjct 5938 TTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATCAAA 5879 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || || ||||||||||| ||| | ||||||| ||||| ||| | Sbjct 5878 CCATTCGATGTACCATTGGTTCCAGCAATCATTGTTCCAGATGCGCGAATGCAATGTGCA 5819 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | ||| ||||||||||||| | || ||||| | || || | | | ||| ||||| Sbjct 5818 TTTAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTCTTGAAG 5759 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || || ||||| ||||| || | ||| | | ||| |||| || || | ||| ||| Sbjct 5758 ATCCCATCAATTGAATCGTCATGCATCGTCAAGAGAAAGCAAGAGCTCATTTGTGGTTTA 5699 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 ||||| || ||||| ||||| || | |||||| | || | || ||||| || Sbjct 5698 CAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATCGGACATCAAA 5639 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | ||| || || || ||| | || | |||||| | | | ||| | ||| Sbjct 5638 TTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTGTGAATTCCAACGGCGACACGCATA 5579 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 || ||| ||||||||||| |||| | |||||| ||| | | |||| || ||| Sbjct 5578 AGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAATATGACCGCTCC 5519 Query 156480 AGAGTTTTAAACCCGAAATA 156499 | |||||| || |||||||| Sbjct 5518 AAAGTTTTGAAACCGAAATA 5499 >seq2527 Length=10055 Score = 107 bits (118), Expect = 6e-18 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATC 133390 |||||||| ||||| || || ||| | ||||| | | || || || ||||| Sbjct 5238 CAGATTGCAGTGGAAGGAATTCACTCTGAAATGTATTCGAAATTGATCGAAACGTACATT 5297 Query 133391 AAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAA 133450 || ||| | ||| | | | | ||| |||||||| ||| ||| ||||| | ||| ||| Sbjct 5298 AACGATCCAGTCGAACAAAATACACTCTTCAACGCAATTCACGACTTTCCGTATATAAAA 5357 Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 |||||| | || ||| | ||| ||||||| | | ||| ||| |||| | ||| Sbjct 5358 AAGAAAGCAGATTGGACAATTCAATGGATTGAAAATAAGAATGCTTCATTTGGGATGCGT 5417 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTT 133569 | ||||| ||||||| ||| || || || |||||| ||| |||| |||| | ||||| Sbjct 5418 GTTGTTGCATTTGCTGCAGTGGAAGGAATCTTTTTCTCTGGCTCGTT-TGCTGCAATTTT 5476 Query 133570 TTGGCTTAAAAAGCGTGG 133587 |||||| || || ||||| Sbjct 5477 TTGGCTGAAGAAACGTGG 5494 >seq5830 Length=32359 Score = 89.7 bits (98), Expect = 2e-12 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | |||||| ||||| || ||||| ||||||||||| || || || |||| | Sbjct 5277 TTGCGGTAGATGTAAGTTCATTTCGTCACCATCAAAATCAGCGTTGTAGGGTGTTGTTAC 5336 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 || || ||||| ||||| || | ||| | | | || | || | |||| |||||| Sbjct 5337 CGAAAGATTCATTCGGAACGT-TGACCACGGA--AGAATCTTGACTCTGTGACCCATCAT 5393 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 |||||| |||| ||||| |||||||| ||||| Sbjct 5394 AGACATCTTGTGAAGAGTAGGCTGACGGTTGAA 5426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471548840586924