Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021538.1 Length=59626 Score E Sequences producing significant alignments: (Bits) Value seq10339 196 2e-45 >seq10339 Length=11660 Score = 196 bits (216), Expect = 2e-45 Identities = 495/745 (66%), Gaps = 11/745 (1%) Strand=Plus/Plus Query 46517 GTGTTCGCCAACAACGACTGCGTTCACGAAACCAAGAGCATGGCAGACGATTCGGTGGAT 46576 ||| | | ||||||||||||||| |||| || ||||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 46577 CTGATCGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 46636 ||| | | |||||||| || ||| || || ||||||||| |||| | || | |||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 46637 TTCGGCCACACCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 46696 |||||||||||||||| ||||| |||||||| ||||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 46697 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 46756 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 46757 ---TTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCACCCTTCCACGCCGAGGCG 46813 ||| | || |||| |||| | | || | || |||||| ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 46814 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCATCACCGAT 46873 ||| | | ||| ||||||| ||| | | ||| | ||| || ||||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 46874 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCC 46933 ||||| || || ||||||||||| ||||| ||||||| ||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 46934 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCCACAAACCGCAAACAGAC 46993 | |||||| ||||| || ||| | ||| | |||| ||| | | || ||| Sbjct 6879 TCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC 6938 Query 46994 AGGTCGAAG-GGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTACACCCGTGC 47052 | | | || || |||||| ||||| || ||| ||| ||| | || | Sbjct 6939 -GCCAGCCGCGGCTATGCCGACGTGCCCGTGGTGAAGGACAAAACCGAGTACTCGCGGCC 6997 Query 47053 CCGTTGGCAGGTGGACGCGCACGCATTCTGGCGCTCGAGCGGAAACAGGACACTGACAGC 47112 || |||||| | ||||| |||| | | |||| | || || || ||||| | Sbjct 6998 GCGCTGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAGGGCGACCGGCTGCTGACGCC 7057 Query 47113 CGACGAGCTCGCCGCGCTGCCACCAGACCAGCTGGCCTCA--CTGTTCACCAAGCACAGC 47170 || ||||| | | || |||| | | | ||| |||||| ||||||| Sbjct 7058 AGAGGAGCTGGAAGGCCT--CACCCATGCCGACATCTTCAAGCTGTTCCGCAAGCACTCG 7115 Query 47171 CTGCAGGACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTGAGCAACTCGAAGGTCG 47229 ||| || ||||||||||| | || ||| |||| |||||||| ||| || | | || Sbjct 7116 CTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGCGAGGCGCTGGCCGAGCG 7174 Query 47230 CGGCGCCCTGCCTGCCACGTTCATG 47254 |||| ||||| |||| |||||| Sbjct 7175 CGGCATGCTGCCCACCACCTTCATG 7199 Score = 114 bits (126), Expect = 5e-21 Identities = 237/345 (69%), Gaps = 12/345 (3%) Strand=Plus/Plus Query 45147 AGGTTGACCCGGGCGAAATTCACTCGATGTTGTTGCCGCACCAACGCGATCTGGTGCGTT 45206 |||| |||| || ||| | || || || || ||||||||| || | |||| | Sbjct 5053 AGGTCGACCAGGCCGACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCT 5112 Query 45207 GGGCTGTC-GCCGGGGGGCGGCG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGT 45264 |||| || ||| ||| | ||| |||| | ||| ||| ||||| |||||||||| | Sbjct 5113 GGGCCATCCGCCTGGG--CTGCGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTT 5170 Query 45265 GATGCAGTTGGAGATTGTCCGCCT-GTCCCTGGCGAAGCACGGCGGCGGTAAAGGTCTGA 45323 ||||||||||||| || ||| | || | || | ||| |||||| | || |||| Sbjct 5171 CGTGCAGTTGGAGATCGTGCGCATCGTGCGTGCCC--GCAT--CGGCGGCATGGGCCTGA 5226 Query 45324 TCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTGGGCATCG 45383 |||| || |||||||| ||||| |||||| || |||||| | || |||||| Sbjct 5227 TCGTCATCCCGCTGGGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCA 5286 Query 45384 AAACCCGGTTCGTTCGCCGTACAGAAGAAGTCGGTGGCG---ACGGAATCTATCTCACCA 45440 | |||| | ||||| | || |||| || | | |||| ||||| ||||||| Sbjct 5287 CGGTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCA 5346 Query 45441 ACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCA 45485 |||| || | |||||||| | ||| |||||||| ||||||| Sbjct 5347 ACTACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190649328569312