Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq10339 726 0.0 >seq10339 Length=11660 Score = 726 bits (804), Expect = 0.0 Identities = 1474/2175 (68%), Gaps = 130/2175 (6%) Strand=Plus/Plus Query 37970 CGCTCACTTTCATCCGGTCGATTGGTGAAGCCGGCGAGGCT---GGCCTTTACATGACGA 38026 || ||| |||||||| || | ||||||| ||| | ||| | ||| | || | Sbjct 5287 CGGTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCA 5346 Query 38027 ACTACGAGACGGTGCGCGAGGGAAAGCTTGACCCCCGTCTGTTCACTGTCGCGTCGCTTG 38086 ||||||| ||| | ||||| | ||||| ||||| | ||||||| || || || | Sbjct 5347 ACTACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGG 5406 Query 38087 ACGAGGCTGCCTGCCTTCGAGGGTTCGGTGGGACAAAGATATTCCGCGAGTTCATGCGGC 38146 ||||||| || ||||| || || ||||| || | |||| ||||||||||||||| || Sbjct 5407 ACGAGGCGGCATGCCTGCGCGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGC 5466 Query 38147 TGTTCG--------------------ATGGC-ATCCGGTTCAAG---------------- 38169 |||||| ||||| | ||| | ||| Sbjct 5467 TGTTCGCCGGCGACGACCGGCGCGACATGGCCAACCGCGTGAAGAGCGCTGGCGTGCCGT 5526 Query 38170 -----TTCCTCGCCACGGCGACACCGTCACCAAACCAATATGTAGAACTGCTGGCCTATT 38224 ||| | |||||||| || || |||||| | | ||| || ||||||||||| Sbjct 5527 ATCGCTTCGTGGCCACGGCCACGCCCAGTCCAAACGAGTTTGTCGAGCTGCTGGCCTACA 5586 Query 38225 CCGCATTCCTCGAGGTTATGGATGTCGGCCAGGCAAAAACGCGGTTTTTCAAGCGCAATT 38284 ||| ||||| | || ||||| || |||||||| || ||||| || ||||||||||| Sbjct 5587 GCGCCTTCCTGGGCGTGATGGACGTTGGCCAGGCCAAGACGCGTTTCTTCAAGCGCAACA 5646 Query 38285 CGGAAAAGGCCGACACGCTCACCAT----CCATC-CGCATAAGGAGCATGAGTTCTGGCT 38339 || |||||||||| || || | ||| | ||| |||| || |||||||| Sbjct 5647 GCGAGAAGGCCGACAACCTGACGCTGAGCCCAGCGCGC-----GAGCGCGACTTCTGGCT 5701 Query 38340 GTGGGTCGCAAGCTGGGGACTGTTTGTCCAGAAGCCCTCCGATCTCGGATGCTCTGATGA 38399 |||||| |||||||||| ||||| || ||||||||||| || ||||| | | || || Sbjct 5702 GTGGGTGGCAAGCTGGGCCCTGTTCGTGCAGAAGCCCTCGGACCTCGGCTACAGCGACGA 5761 Query 38400 AGGTTACGAGCTACCGGAAATTGAGGTGCGCTGGCATGAGTTGCCCGCCGACCATGCATC 38459 || |||||||| ||| || || | |||||||| ||| | || || ||||| || Sbjct 5762 CGGCTACGAGCTGCCGCCCATCGACATCCGCTGGCACGAGATCCCGGCGGACCACGCCGA 5821 Query 38460 GGCCGGTACCGAAAAGAGCGGGCAGG-GCCGCC-TTCT-GCGCAATGCCGCAGCGTCTCT 38516 || |||||| | | | ||| |||| || | ||| |||| | ||| | || | Sbjct 5822 CGCTGGTACCAATATGGACGGCCAGGCGCAGATGTTCAAGCGCCAGGCC--ATCGGCGTG 5879 Query 38517 TTCCGACACCGCAAGGGAGAAGCGCGACAGCCTTGGTATCCGCATTGCCAGGATGATGGA 38576 | ||| | || | ||||||||||||||||| | | ||| | |||| ||||||||| Sbjct 5880 GTG-GACGCGGCGCGCGAGAAGCGCGACAGCCTGGATGCGCGCGTGGCCAAGATGATGGA 5938 Query 38577 ACTGCGCGCCGAAGACCCCGACGCGCACCGCATCATCTGGCACGATCTGGAGGCTGAGCG 38636 ||||||||||| ||||| | ||| ||||| | ||||||||||| ||||||| |||||| Sbjct 5939 GCTGCGCGCCGAGGACCCGGCCGCCCACCGTGTGATCTGGCACGACCTGGAGGATGAGCG 5998 Query 38637 GCTGGCGATCGAGGCTGCCATTCCCGACGTG-GTCAGCGTCTATGGCGCCCAGGACCTCG 38695 | || |||||| ||||| ||||||| | ||||||||| ||| ||||||||| | Sbjct 5999 CCGCGCCATCGAGCGCGCCAT-CCCGACGGCCGCCAGCGTCTACGGCACCCAGGACCCGG 6057 Query 38696 AT---GATCGTGAACAGTCGATCGTCGGTTTCTCGCATGGGCGCATCCGCGAAATC-GCA 38751 | || || || | | | || | ||| |||| | |||| || | ||| Sbjct 6058 AGACCGAGCGCGAGCCCCTGGTGGTGGCCTTCAGCGATGGCCTGATCCAGGAGCTGAGCA 6117 Query 38752 GCCAAGCCCGTCATGCTCGGCTCGGGCTGCAATTTCCAGCGACATTGCTGGTGGGCAATC 38811 || |||||||| |||| ||| |||||||| | ||||| || ||| ||||| ||| Sbjct 6118 GC-AAGCCCGTGCTGCTGGGCAGCGGCTGCAACCTGCAGCGGCACTGCGCCTGGGCGATC 6176 Query 38812 TTCCTCGGCATTGGTCACAAGTTCAATGACTTCATCCAGGCCGTTCACCGCATCCAGCGA 38871 | ||| ||||| || ||||||| |||||||||||| | || |||||| ||||||| Sbjct 6177 TACCTGGGCATCGGCTTCAAGTTCGCCGACTTCATCCAGTCGGTGCACCGCCTCCAGCGC 6236 Query 38872 TTTCTCCAGACGCACAAAGTTCGCATCGACCTCATCTACACCGAAGCGGAACGACCGGTG 38931 || || ||||||| | | || ||||||||||| ||||||||||| || || || |||| Sbjct 6237 TTCCTGCAGACGCGCCAGGTGCGCATCGACCTGATCTACACCGAGGCCGAGCGCGAGGTG 6296 Query 38932 CGCGACAACCTCGAAGCCAAATGGCGACGCCACGTGGAGCAGATGGCAATCATGACAGAT 38991 ||| | ||| ||| ||||||| | ||| |||||| ||||| |||||| || Sbjct 6297 CGCCGGACCCTGGAACGCAAATGGGCCCAGCACAAGGAGCAAGTGGCACGCATGACGGAA 6356 Query 38992 ATCATTCGCAAATATGGCCTGTCGTCTGCGGCGATGGCTGAAACCCTCACGCGCGCCATG 39051 ||||| ||| || ||||| ||||| ||| | || || | ||||||||| Sbjct 6357 ATCATCAAGGAATTCGGGTTGTCGCACGCGGCCATGATCCAGACGCTGAGCCGCGCCATG 6416 Query 39052 GGTGTTGAGCGGATCGAAGTTTGCGGCCCGGGC------TATCGGCTGGTCAACAATGAT 39105 || || ||||| |||| || ||| |||||| || |||||||||||| || Sbjct 6417 GGCGTGGAGCGCGTCGAGGTGCGCGCGCCGGGCGGCGAGTACGTGCTGGTCAACAACGAC 6476 Query 39106 TGCGTGATGGAGTGCAAGAAG-ATGGGCTCCAACAGCGTTGACCTGATTGTCACATCGAT 39164 ||||||| ||| | | | |||| | | ||||||| | |||| | | || || Sbjct 6477 TGCGTGAACGAG-ACGCGCCGCATGGCCAGCGACAGCGTGGGCCTGGTGCTGACCAGCAT 6535 Query 39165 CCCGTTTTCCACCCAATACGAGTATTCGCCGAACTATGCCGACTTCGGTCATACCGAAGA 39224 ||| || ||| || |||||||| ||||| |||| ||||||||||| || ||||| Sbjct 6536 CCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGACTTCGGCCACACCGACAG 6595 Query 39225 CAATGAGCATTTCTGGCAGCAGATGGATTTCCTCATCCCCGAATTGCTGCGGGTTCTGGC 39284 ||| | ||| |||| ||||||||||| ||||| | || || ||||||| || ||| Sbjct 6596 CAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAGCTGCTGCGCGTGCTGAT 6655 Query 39285 GCCGGGGCGTGTCGCCGCAATCCATGTGAAGGATCGCATCGTTCCCGGGGGTA---TGAC 39341 |||||| | || ||||| ||||| || ||| | |||||||| ||| | || | || Sbjct 6656 GCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTGCCCAGCGGCATGGTGGA 6715 Query 39342 GGGTCTGGGGTTTCAAACCGTCTACCCGTTCTCCGACGATTGCATCGCCCGTTTCAAGCG 39401 ||| | || || || |||| ||||| ||| || || ||||||| | ||| || Sbjct 6716 GGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACCATCGCCTGCTTCCGCCG 6775 Query 39402 GCACGGGTTCGCTTTCCTCTCTCGCAAGACGATCACCACGGATGTTGTCCGGGAAAATAA 39461 | ||| ||| ||| | |||||||| ||| ||| || || || || || || || Sbjct 6776 GGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGACGTGGTGCGCGAGAACAA 6835 Query 39462 TCAGACGTATCGCTTGGGATGGTCGGAACAATGCAAAGATGGCAGCCGCATGGGTAACGG 39521 ||||| || ||| |||| | || |||||||| |||||| |||||||| ||| Sbjct 6836 CCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGCTCGCGCATGGGCTTCGG 6895 Query 39522 CCTGCCGGAATATCTGCTGATCTTCCGTAAGCCTCCGTCCGA---TAGTTCGAACGGATA 39578 | || || || |||||||||||||| ||| | ||| |||| || || ||| || Sbjct 6896 CATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGACGCCAG-CCG--CGGCTA 6952 Query 39579 TGCCGATATTCCTGTCAAAAAGCAGAAGCGGGAATGGAAGCAAGGTCACTGGGACAATCC 39638 |||||| | || || ||| | || || | || ||| | Sbjct 6953 TGCCGACGTGCCCGTGGTGAAGGACAA----------AACCGAG--TACTCG-------- 6992 Query 39639 TGCTGGATACAGCCGCGCCCGTTGGCAGCTTGACGCCCACGGCTTCATGCCGAGCTCGGG 39698 | ||||||| |||||| | ||||||||||||| | || ||| ||| Sbjct 6993 ---------CGGCCGCGC----TGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAGGG 7039 Query 39699 CAATCGTCTGCTCTCGACCGAAGAAATGGCGGGTTTGGAGCATCACCAGATCTTCAAACT 39758 | | || ||||| || | || || ||| || | ||| | | |||||||| || Sbjct 7040 CGACCGGCTGCTGACGCCAGAGGAGCTGGAAGGCCTCACCCATGCCGACATCTTCAAGCT 7099 Query 39759 GT---GGAAGCGCTACTCTCTCGAGACGGTCTATGATTTTGAGCACCACGTAAAAATCGC 39815 || | |||| |||| || ||| ||||| || || |||||| |||| |||| Sbjct 7100 GTTCCGCAAGC---ACTCGCTGGAGCGCGTCTACGACTTCGAGCACGACGTGCGCATCGG 7156 Query 39816 CGAGCATCTGGAAGAGCGGGGCATGCTGCCCTCCACCTTCATGCTGCTGCCGCCCCACTC 39875 |||| |||| ||||| |||||||||||| |||||||||||||||||| ||| || Sbjct 7157 CGAGGCGCTGGCCGAGCGCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGCAGAG 7216 Query 39876 GACGGATGATGGTACCTGGACCGATATTACGCGCATGCTCTCGATGAACA-CGCTGCAGG 39934 | || | ||||||||| | |||||||||| | || | |||| ||| |||| Sbjct 7217 CTGGCATCCGGACGTCTGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGC-GCAGT 7275 Query 39935 CTGCGGCGGGTAAGGAAATGCACCTTTGCCCGCTTCAGTTCGACATCGTCGATCGAGCCA 39994 | || || || || |||||||| |||||| | ||||||||||| | || || || | Sbjct 7276 CGGCAGCCGGGCGCGAGATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGA 7335 Query 39995 TCGCCCAGTATTCC--GAACCGGGTGAGACGGTGTTCGATCCGTTCGGCGGCTTGATGAC 40052 || ||||||| ||| ||| ||| ||| ||| | ||| || ||||||||| ||||||| Sbjct 7336 TCACCCAGTACTCCATGAA--GGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGAC 7393 Query 40053 CGTGCCTTATCGGGC 40067 ||||| || ||||| Sbjct 7394 GGTGCCCTACCGGGC 7408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169776061811136