Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq9889 219 1e-52 seq12872 138 3e-28 >seq9889 Length=1737 Score = 219 bits (242), Expect = 1e-52 Identities = 248/331 (75%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 1780 AACGC-ATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGACACGGTGTATAGCG 1838 ||||| ||| ||||||| | |||||||| |||||||| |||||||||||||| || |||| Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 1839 TCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCG 1898 | ||| | || ||| |||| || | ||||| || || ||||||||||||| ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 1899 TTCTGACCGTTACCGATGGTGCAGAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAG 1958 | |||||||| || || || || || || ||||| ||||||||||| ||||| |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 1959 CGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCTTTCGGAGCGACCGGGC 2018 ||| | | | | |||||||| ||| | || || || || ||||| ||||| || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 2019 TGTCACATGACCTTGCTGATGAAGACCTGAATCCCGTTACTATCGTCCAGAACTTCGCCA 2078 |||| |||| | || ||||||| | | || || | | || ||||||||| || Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 2079 ATATGTCCGACCCGATGAAAGAGCTGGAGGC 2109 | ||| |||||||||||| |||||||| || Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 168 bits (186), Expect = 2e-37 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1580 GTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTG 1639 ||||||||||| || ||||| ||||||||||| || || || |||||| ||||| || Sbjct 17 GTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATG 76 Query 1640 GTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAGCCG 1699 ||||||||| | ||||| || | || ||||| || || ||||||||||| || || Sbjct 77 GTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCC 136 Query 1700 TGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTAT 1759 || |||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 137 TGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTTT 196 Query 1760 ACCCGCGA 1767 ||||| || Sbjct 197 ACCCGTGA 204 >seq12872 Length=1234 Score = 138 bits (152), Expect = 3e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 9047 GCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAA 9106 |||| |||||||||| |||| || |||| |||||| ||||| ||| || ||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 9107 GGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAA 9166 || || ||| | || | || | |||||||||| || || || || || ||| ||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 9167 CTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGAACACG 9226 ||| || || ||||| |||| |||||||| || ||| | ||||||||||||||| | Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 9227 CTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTTTTTGC 9267 ||||| ||||||||| |||||||||||||| || || || Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGC 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132575958715288