Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3577 131 2e-24 seq676 122 1e-21 seq5854 120 4e-21 seq2007 113 6e-19 seq2569 109 7e-18 seq7778 104 3e-16 seq13096 96.9 4e-14 >seq3577 Length=21504 Score = 131 bits (144), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||| || ||||| | ||||| || || || | | | Sbjct 13159 GCTTGGCGAGTTCTCCGGGGAGGATGAGACGCACAGAAGTCTGAATTTCCCGAGAGGAAA 13100 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| ||||| || ||| | ||||||| |||| | Sbjct 13099 TGGTCGAGCGCTTGTTGTAGTGCGCAAGACGCGAAGCTTCGCCGGCGATGCGCTCGAAGA 13040 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||||| | ||| |||||||| |||||||| Sbjct 13039 CGTCGTTGACGAACGAGTTCATGATGGACATGGCCTTCGACGAGATGCCGGTGTCGGGGT 12980 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 |||||||||||||||| ||||| | | ||| ||||| || Sbjct 12979 GCACCTGCTTGAGCACACGGTAGACGTA-GACAGAGTAGGA 12940 >seq676 Length=604 Score = 122 bits (134), Expect = 1e-21 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| | | || ||||| || | |||||||| ||||| | || Sbjct 32 GCTTGGCCAACTCGCCGGGGAGAATAAGGCGTACAGATGTCTGGATTTCGCGGGACGAGA 91 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| || ||||| | ||| ||| || | ||||| || | | Sbjct 92 TGGTCGAGCGCTTGTTGTAGTGTGCGAGACGACTGGCTTCGTTGGCTATGCGCTCAAAGA 151 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| || |||||||||| |||||| | ||| ||||| || ||| |||| Sbjct 152 CGTCATTGACGAATGAGTTCATGATCGACATGGCCTTCGACGAGATTCCGGTGTCAGGGT 211 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 |||| ||||||||||| ||||| | | ||| |||||||| Sbjct 212 GCACTTGCTTGAGCACACGGTAGACGTA-GACGGAGTACGA 251 >seq5854 Length=26239 Score = 120 bits (132), Expect = 4e-21 Identities = 147/196 (75%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGA-CAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 ||||||||||||||||| | | |||||| ||| | | || | ||||| ||| || Sbjct 17601 AAGCGCACCGACGACATTCCCCAGTGGGATCAACAATTCATGA-AGGTCGACCAGGGAAC 17543 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATC--AAGCCTCTGCTCGATCTT 1592224 ||||| || | ||||| ||||| |||||| | || ||| | ||||| || || | Sbjct 17542 GCTCTTCGAACTCATCCTGGCCGCTAACTACATGGAGATCCGAGGCCTC--CTGGACATC 17485 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 || |||||| ||||||| || ||||||||||| ||||||||||| ||||| ||| || Sbjct 17484 GGTTGCAAGACTGTGGCTAATATGATCAAGGGAAAGTCGCCCGAAGAGATTCGCCGCACT 17425 Query 1592285 TTTAACATCAAGTACG 1592300 || ||||||||| ||| Sbjct 17424 TTCAACATCAAGAACG 17409 >seq2007 Length=27052 Score = 113 bits (124), Expect = 6e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGAT 92662 ||||||||| ||||| |||||||||||| | || || ||||| || |||| Sbjct 25191 GGCGATCTGTTTTGTGAGACGCTCCTGCACCTGAAGACGACGGGCGAACATCTCAACGAC 25250 Query 92663 GCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTT 92722 ||| | || |||||| || || | ||| | |||||||||| || | ||| | || Sbjct 25251 GCGAGCGAGCTTGCTGAGCCCCAGAATCTTCTTGTTGGGCAGGTATCCGATGTGCACTTT 25310 Query 92723 GCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGAT 92782 || || ||||||| || ||||||||||| | ||||| || |||| ||||||||||| Sbjct 25311 TCCGATGAAGGGCACAAGGTGGTGCTCGCAGAGCGAGAAGAACTCGATGTCGCGCACGAG 25370 Query 92783 CACCATCTCG 92792 |||||||||| Sbjct 25371 CACCATCTCG 25380 >seq2569 Length=10691 Score = 109 bits (120), Expect = 7e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413 || ||| | | ||| || || |||| | ||||| ||||| | ||||||| ||| Sbjct 3381 TCTCCGGGAAGGATGAGACGGACGGAAGATTGGATTTCGCGGGACGAGATCGTGGATCGC 3322 Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| | || || ||||| |||||||| ||||||| |||| | ||| |||||| Sbjct 3321 TTGTTGTAATGAGCGAGACGAGAAGCCTCGGTAGCGATGCGTTCGAAGACGTCATTGACA 3262 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 || |||||||||| ||||| | ||| ||||| || ||||||||| ||||||||| Sbjct 3261 AAGGAGTTCATGATGGACATGGCCTTCGATGAGATTCCGGTGTCGGGGTGGACCTGCTTG 3202 Query 1254534 AGCACCTTGTAGATGAAC 1254551 ||||| ||| ||| || Sbjct 3201 AGCACACGGTAAATGTAC 3184 >seq7778 Length=8617 Score = 104 bits (114), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | || || || |||| || || || ||||| | || Sbjct 1070 GCTTGGCGAGTTCACCGGGGAGAATAAGACGGACGGAAGTTTGAATTTCGCGGGACGAGA 1129 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||||| |||| || || ||| |||||| |||| || |||| | Sbjct 1130 TAGTTGAACGTTTGTTGTAGTGGGCGAGTCGGGAGGCCTCCTGAGCGATACGCTCGAAGA 1189 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||| |||||||||| ||||| | ||| ||| ||||| |||||||| Sbjct 1190 CGTCGTTGACAAAGGAGTTCATGATGGACATGGCTTTGGAGGATATGCCGGTGTCGGGGT 1249 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||||| || ||||| | || ||||| || Sbjct 1250 GCACCTGCTTGAGGACACGGTAGACGTACACGGAGTAGGA 1289 >seq13096 Length=950 Score = 96.9 bits (106), Expect = 4e-14 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 92695 CCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACA 92754 ||||||| | |||| | ||||| |||||||| || || |||||||| ||||||||||||| Sbjct 484 CCGTGGGGATGTAGGCAACGTGCGCCTTGCCGATGAACGGCAGCAGGTGGTGCTCGCACA 425 Query 92755 TGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCG 92792 || | | |||| |||||| ||||||||||||||| Sbjct 424 ACGAATACAGCTCGATGTCGCGTACGATCACCATCTCG 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105969614137884