Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_022060.1 Length=54314 Score E Sequences producing significant alignments: (Bits) Value seq10339 239 2e-58 >seq10339 Length=11660 Score = 239 bits (264), Expect = 2e-58 Identities = 658/994 (66%), Gaps = 17/994 (2%) Strand=Plus/Plus Query 40947 GTGTTCGTCAACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGAT 41006 ||| | ||||||||||||||||| |||| || | ||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 41007 CTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 41066 ||| | | || ||||| || ||| || || ||||||||| |||| | || | |||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 41067 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 41126 ||||||||||||||| ||||||||| |||| ||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 41127 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 41186 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 41187 ---TTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGAGGCG 41243 ||| | || |||| |||| | | || | || ||| ||| ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 41244 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 41303 ||| | | |||| ||||||| ||| | | ||| | ||| | |||||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 41304 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 41363 |||||||| || ||||||||||| ||||| ||||||| ||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 41364 ACCAAGATGGGTGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 41423 | ||||| ||||| || ||| | ||| | |||| ||| | | || ||| Sbjct 6879 TCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC 6938 Query 41424 AGGTCGAAG-GGATACGCCGACACACCCGTCACCAAATCCAAGGACGAATACACCCGTGC 41482 | | | || || |||||| ||||| || ||| ||| ||| | || | Sbjct 6939 -GCCAGCCGCGGCTATGCCGACGTGCCCGTGGTGAAGGACAAAACCGAGTACTCGCGGCC 6997 Query 41483 CCGATGGCAGGTGGACGCGCACGCGTTCTGGCGCTCGAGCGGCAACCGGTTACTGACCGC 41542 || |||||| | ||||| |||| | | |||| | ||| ||||| | ||||| | Sbjct 6998 GCGCTGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAGGGCGACCGGCTGCTGACGCC 7057 Query 41543 CGACGAGCTCGCCGCACTGCCACCAGACCAGTTGGCCTCA--CTGTTCACCAAGCACAGC 41600 || ||||| | | || |||| | | | ||| |||||| ||||||| Sbjct 7058 AGAGGAGCTGGAAGGCCT--CACCCATGCCGACATCTTCAAGCTGTTCCGCAAGCACTCG 7115 Query 41601 CTGAAGGACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTGAGCAACTCGAAGGTCG 41659 ||| || ||||||||||| | || ||| |||| |||||||| ||| || | | || Sbjct 7116 CTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGCGAGGCGCTGGCCGAGCG 7174 Query 41660 CGGTGCCCTGCCTGCTACGTTCATG--GCCATCGCCCCGGGATCGTGGTCACCTCACGTG 41717 ||| ||||| | || |||||| || ||| | || | ||| || |||| Sbjct 7175 CGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGC-AGAGC-TGGCATCCGGACGTC 7232 Query 41718 TGGCACGACGTGAACCGGATGATCACCTTGAACGGGGAGCAGAAACGCCGCAACG-TCCA 41776 ||| |||||||| || ||| ||| | ||| | | |||| || || | | | Sbjct 7233 TGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAG-TCGGCAGCCGGGCGCGA 7291 Query 41777 AATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAA 41836 ||||| ||||||| ||||||||||||| | |||||| |||||| | | ||| | Sbjct 7292 GATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGATCACCCAGTACTCCAT 7351 Query 41837 TCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCT 41896 |||||| ||| | |||||| |||||||| ||| || ||||| | |||||| | Sbjct 7352 GAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACGGTGCCCTACCGGGCTGT 7411 Query 41897 GAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTG 41930 | || || ||||||||||| || ||||||| Sbjct 7412 GCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Score = 122 bits (134), Expect = 3e-23 Identities = 231/331 (70%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 39591 GACGTTCACCCGATGCTGCTGCCACACCAGCGTGACCTGGTGCGCTGGGCGGTC-GCCGG 39649 ||||| ||||| ||||| ||| |||||| | |||| |||||| || ||| | Sbjct 5067 GACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTG 5126 Query 39650 GGGGCGGCG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACCGTGATGCAGCTGGAGA 39708 || | ||| |||| | ||| ||| ||||| ||||||||||| | ||||| |||||| Sbjct 5127 GG--CTGCGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGA 5184 Query 39709 TCGTGCG-ATTGTCGCTAGCCAAGCATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTG 39767 ||||||| || || || ||| |||| ||| || | || |||||||| || |||||| Sbjct 5185 TCGTGCGCATCGT-GCGTGCCC-GCAT--CGGCGGCATGGGCCTGATCGTCATCCCGCTG 5240 Query 39768 GGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTT 39827 || ||||| |||||| || |||||| | || |||||| | |||| | Sbjct 5241 GGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCACGGTCAAGTTCATC 5300 Query 39828 CGCCGTACAGACGAAGTCGGTGGTG---ACGGAATCTATCTCACCAACTATGAGAGTGTC 39884 ||||| | || |||| || | |||| ||||| ||||||||||| || | || Sbjct 5301 CGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATC 5360 Query 39885 CGCGACGGAAAGTTGGACCCGACACTGTTCA 39915 |||||| | ||| |||||||| ||||||| Sbjct 5361 CGCGACCGCAAGCTGGACCCGCTGCTGTTCA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173653805421024