Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq9889 219 1e-52 seq11850 217 4e-52 seq12872 145 2e-30 >seq9889 Length=1737 Score = 219 bits (242), Expect = 1e-52 Identities = 248/331 (75%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 1722 AACGC-ATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGACACGGTGTATAGCG 1780 ||||| ||| ||||||| | |||||||| |||||||| |||||||||||||| || |||| Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 1781 TCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCG 1840 | ||| | || ||| |||| || | ||||| || || ||||||||||||| ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 1841 TTCTGACCGTTACCGATGGTGCAGAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAG 1900 | |||||||| || || || || || || ||||| ||||||||||| ||||| |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 1901 CGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCTTTCGGAGCGACCGGGC 1960 ||| | | | | |||||||| ||| | || || || || ||||| ||||| || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 1961 TGTCACATGACCTTGCTGATGAAGACCTGAATCCCGTTACTATCGTCCAGAACTTCGCCA 2020 |||| |||| | || ||||||| | | || || | | || ||||||||| || Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 2021 ATATGTCCGACCCGATGAAAGAGCTGGAGGC 2051 | ||| |||||||||||| |||||||| || Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 168 bits (186), Expect = 2e-37 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1522 GTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTG 1581 ||||||||||| || ||||| ||||||||||| || || || |||||| ||||| || Sbjct 17 GTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATG 76 Query 1582 GTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAGCCG 1641 ||||||||| | ||||| || | || ||||| || || ||||||||||| || || Sbjct 77 GTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCC 136 Query 1642 TGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTAT 1701 || |||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 137 TGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTTT 196 Query 1702 ACCCGCGA 1709 ||||| || Sbjct 197 ACCCGTGA 204 >seq11850 Length=4863 Score = 217 bits (240), Expect = 4e-52 Identities = 332/471 (70%), Gaps = 4/471 (1%) Strand=Plus/Minus Query 18659 TGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCT 18718 || || || ||| |||||| ||||| ||||||||||| |||||||||| || |||||| Sbjct 2432 TGTCGGCGTTTAGGGTTATAGAACATCTCGATGTAATCGAAAATATCACTTCGGGCTTCT 2373 Query 18719 TCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTT 18778 || || ||| |||||||||| || || || || |||| ||||||||||| || Sbjct 2372 TCACGGGTTGTGTAGATCTTTCGTCGGATTCGCTCTCGCTTCAAAAGCTGGAAAAAGCTC 2313 Query 18779 TCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGT 18838 || || || || ||||| || ||||| || || |||||||| |||| | || Sbjct 2312 TCGGCTACGGCATTGTCGTGGCAGTTTCCCCGCCGGCTCATGCTGCTGATTACATTGTTG 2253 Query 18839 GATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACC 18898 | |||| || | ||| || |||| || |||||||||||||||| || |||| | Sbjct 2252 GCCTTCAAAAAGCTTTTCCAATCCGAGCTACTGAACTGACTGCCTTGATCTGAGTGAATC 2193 Query 18899 AGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATA 18958 | || |||| ||||| || |||||||| || ||||||| | || | | | | Sbjct 2192 ATAACTTGCTGCTGAGGCTTGCGTCGCCAAACAGCCATCAACATCGCGTCGATAGCCAGG 2133 Query 18959 TCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACA 19018 || | ||||| |||| ||||||||| ||||| |||| ||| |||||||| || | Sbjct 2132 TCGCTGCACATCCTTGGCTTCATTGACCAACCAATTACTTGGCGTGAGAACAGATCCAGC 2073 Query 19019 ACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAA 19078 || || || || || ||||| ||||| | || |||||||| ||||| || || ||||| Sbjct 2072 ACTACCGCGAGGTAGAGCCACCCTTCATAGGTGCGGATGTAAGTGATATCTGTCACCCAG 2013 Query 19079 CGCTCATCCGG--TGCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCG 19127 || | ||| ||| | |||||||||||| ||| |||||||| Sbjct 2012 ACCTTGTTCGGCTCACTTAC--CTTGAACTGCCGCGCGAGGTGGTTGGGCG 1964 >seq12872 Length=1234 Score = 145 bits (160), Expect = 2e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 9003 GCCAGTGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGATCAAA 9062 |||| ||||||||| |||| || |||| |||||| ||||| ||| |||||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 9063 GGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGAGCGGGGATCGTGGAAAACTACGAA 9122 || || ||| | || | || | |||||||||| || || || || || ||| ||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 9123 CTGTTTAAGCAGTACCTGGTTTTGGAGCGTGATGCCAGCGATCCGAACCGCCTGAACACG 9182 ||| || || ||||| || | |||||||| || ||| | ||||||||||||||| | Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 9183 CTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTCTTTGCCGTGGTTAACCAGCTCCGT 9242 ||||| ||||||||| |||||||||||||| || || || || | ||||| |||| Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGCGCTGCTGTACCAGTTCCGC 802 Query 9243 CTTCAGTA 9250 || ||||| Sbjct 801 CTGCAGTA 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127082488601280