Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13049 127 2e-24 seq10049 102 6e-17 seq12214 93.3 3e-14 >seq13049 Length=11502 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || || || || ||||| ||||| | | |||||| Sbjct 7409 ACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCC 7350 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || | | |||||| || || ||||| |||||||| Sbjct 7349 ATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTT 7290 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||||| |||| | |||| || ||| ||||| ||||| || Sbjct 7289 GTCCTGGATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGAT 7230 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACG 29795 ||||| ||||| | ||| || || || |||||||| || || || Sbjct 7229 CGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTTGAAGCG 7185 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||| ||||| || || | | |||||| Sbjct 10069 ACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCC 10010 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||||||||||||| | || | | |||||| || || || | || ||||| Sbjct 10009 GTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTT 9950 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| |||||| | || | |||| || ||| ||||| ||||| || Sbjct 9949 GTCCTGGATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGAT 9890 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACG 29795 ||||| ||||| | ||| || || || |||||||| || || || Sbjct 9889 CGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTTGAAGCG 9845 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||| ||||| ||||| || || | | |||||| Sbjct 10525 ACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCC 10466 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | ||||||| || ||||| || || || |||||||| Sbjct 10465 ATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTT 10406 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | |||||| | || | |||| || ||| ||||| ||||| | Sbjct 10405 GTCCTG-AATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGA 10347 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | ||| || || || |||||||| Sbjct 10346 TCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 10310 >seq10049 Length=10599 Score = 102 bits (112), Expect = 6e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || ||||||||||| || || || || || | | |||||| Sbjct 8403 ACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCC 8462 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | ||||||| ||||| || ||||| || || || || Sbjct 8463 ATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGCGGGATTCCGTCCTT 8522 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||||| | ||| |||||| |||| | | | ||||| ||| ||||| Sbjct 8523 ATCTTGGATTTTGGCTTTGACGTTTTCAATACTATCAGAGGCTTCGACTTC 8573 >seq12214 Length=697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || ||||| || ||||| || | || | | | ||| ||| Sbjct 84 AGGACCAAATGAAGAGTCGATTCCTTCTGAATATTCCAGTCGGACAAGATGCAGTCATCT 143 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 | |||||| ||||| || | ||||||| ||||| | | ||| | ||||| ||||| Sbjct 144 GCAAGTTGTCTGCCACCAAAGATCAATCGCTGCTGGTGTGTAGGATTGCCCTCCTTGTCC 203 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||||| |||| | | | ||||| ||| ||||| | || | || Sbjct 204 TG-AATCTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAAGGTAAATGT 262 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | |||||||| |||||||| Sbjct 263 CTTGCCAGTAGAGATCTTAACAAAGATCTGCAT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385152288869532