Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_023580.1 Length=57775 Score E Sequences producing significant alignments: (Bits) Value seq10339 183 1e-41 >seq10339 Length=11660 Score = 183 bits (202), Expect = 1e-41 Identities = 643/987 (65%), Gaps = 19/987 (2%) Strand=Plus/Plus Query 45244 CAACAACGACTGCGTACCCGAAACCGAGTCG-ATGGACGACAACTCGGTGGACCTGATCG 45302 ||||||||||||||| ||| | || | || |||| | | || |||| |||| | Sbjct 6467 CAACAACGACTGCGTGAACGAGA-CGCGCCGCATGGCCAGCGACAGCGTGGGCCTGGTGC 6525 Query 45303 TCACCAGTATTCCGTTCTCCAATCACTACGAATACACCCCGTCCTACAACGACTTCGGTC 45362 | ||||| || || ||| || || ||||| ||| | || || | ||||||||| | Sbjct 6526 TGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGACTTCGGCC 6585 Query 45363 ACACCGACGACAACGCGCATTTCTGGGCGCAAATGGACTACCTCACACCGCAACTGTTGC 45422 |||||||| ||||||||| |||| ||| ||||||| ||| ||| | ||| ||| Sbjct 6586 ACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAGCTGCTGC 6645 Query 45423 GCATCCTTGCGCCCGGGCGGATCTACGCCTGCCACGTCAAAGACCGCATCTTG---TTCG 45479 || | || ||| || || | |||| ||||||||| |||||||| || || Sbjct 6646 GCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTGCCCAGCG 6705 Query 45480 GCAATGTCACCGGCGCTGGCGTGCCCACCGTGTCACCATTTCACGCCGAAGCGATCTTCC 45539 ||| || |||| ||| | | |||| || || || ||| || | ||| | Sbjct 6706 GCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACCATCGCCT 6765 Query 45540 ACGGCCGCAAACACGGCTTTGACTACCTCGGCATGATCACCGTTGTCACCGATGTGGTAC 45599 | |||| |||||| ||| | | ||| | ||| | |||||||| ||||| | Sbjct 6766 GCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGACGTGGTGC 6825 Query 45600 GGGAAAACAACCAGACGTACCGGTTGGGTTGGTCCGAGCAGTGCAAAGACGCCACCAAGA 45659 | || ||||||||||| ||||| |||| | |||||| ||||| || | | | | Sbjct 6826 GCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGCTCGCGCA 6885 Query 45660 TGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACAGACAGATCGA 45719 ||||| | ||| || ||| | ||| | |||| || | | ||| ||| | | Sbjct 6886 TGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC-GCCAGC 6944 Query 45720 AG-GGATACGCCGACACCCCCGTCACCAAATCCAAGGACGACTACACCCGTGCCCGCTGG 45778 | || || |||||| ||||| || ||| ||| ||| | || | |||||| Sbjct 6945 CGCGGCTATGCCGACGTGCCCGTGGTGAAGGACAAAACCGAGTACTCGCGGCCGCGCTGG 7004 Query 45779 CAGGTGGACGCGCACGCGTTCTGGCGCTCGAGCGGCAACAGGACACTGACAGCCGACGAG 45838 ||| | ||||| |||| | | |||| | ||| || || ||||| | || ||| Sbjct 7005 CAGTTCGACGCCCACGGCTACGCGCGCAGCAAGGGCGACCGGCTGCTGACGCCAGAGGAG 7064 Query 45839 CTCGCCGCGATGCCACCAGACCAGCTGGCCTCA--CTGTTCACCAAGCACAGCCTGCAGG 45896 || | | | |||| | | | ||| |||||| ||||||| ||| || Sbjct 7065 CTGGAAGGCCT--CACCCATGCCGACATCTTCAAGCTGTTCCGCAAGCACTCGCTGGAGC 7122 Query 45897 ACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTGAGCAACTCGAAGGTCGCGGCGCC 45955 ||||||||||| | || ||| |||| |||||||| ||| || | | |||||| Sbjct 7123 GCGTCTACGACTTCGAG-CACGACGTGCGCATCGGCGAGGCGCTGGCCGAGCGCGGCATG 7181 Query 45956 CTGCCTGCCACGTTCATG--GCCATCGCCCCGGGATCGTGGTCACCTCACGTGTGGCACG 46013 ||||| |||| |||||| || ||| | || | ||| || |||| ||| || Sbjct 7182 CTGCCCACCACCTTCATGCTGCTGCAGCCGC-AGAGC-TGGCATCCGGACGTCTGGACCG 7239 Query 46014 ACGTGAACCGGATGATCACCTTGAACGGGGAGCAGAAACGCCGCAACGTTC-AAATGCAC 46072 |||||| || ||| ||| | ||| | | |||| || || | | | |||||| Sbjct 7240 ACGTGACGCGCATGCGCACGCTCAACAGCGCGCAG-TCGGCAGCCGGGCGCGAGATGCAC 7298 Query 46073 GTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGC 46132 ||||||| ||||||||||||| | |||||| |||||| | | ||| | ||| Sbjct 7299 CTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGATCACCCAGTACTCCATGAAGGGC 7358 Query 46133 GAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAAACTC 46192 ||| ||| | |||||| |||||||| ||| || ||||| | |||||| || || Sbjct 7359 GAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACGGTGCCCTACCGGGCTGTGCTGCTG 7418 Query 46193 GGTCGGCGCGGCCGTGGTGTCGAGCTG 46219 || ||||||||||| || ||||||| Sbjct 7419 GGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Score = 122 bits (134), Expect = 3e-23 Identities = 231/331 (70%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 43880 GACGTTCACCCGATGCTGCTGCCACACCAGCGTGACCTGGTGCGCTGGGCGGTC-GCCGG 43938 ||||| ||||| ||||| ||| |||||| | |||| |||||| || ||| | Sbjct 5067 GACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTG 5126 Query 43939 GGGGCGGCG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACCGTGATGCAGCTGGAGA 43997 || | ||| |||| | ||| ||| ||||| ||||||||||| | ||||| |||||| Sbjct 5127 GG--CTGCGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGA 5184 Query 43998 TCGTGCG-ATTGTCGCTAGCCAAGCATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTG 44056 ||||||| || || || ||| |||| ||| || | || |||||||| || |||||| Sbjct 5185 TCGTGCGCATCGT-GCGTGCCC-GCAT--CGGCGGCATGGGCCTGATCGTCATCCCGCTG 5240 Query 44057 GGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTT 44116 || ||||| |||||| || |||||| | || |||||| | |||| | Sbjct 5241 GGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCACGGTCAAGTTCATC 5300 Query 44117 CGCCGTACAGACGAAGTCGGTGGTG---ACGGAATCTATCTCACCAACTATGAGAGTGTC 44173 ||||| | || |||| || | |||| ||||| ||||||||||| || | || Sbjct 5301 CGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATC 5360 Query 44174 CGCGACGGAAAGTTGGACCCGACACTGTTCA 44204 |||||| | ||| |||||||| ||||||| Sbjct 5361 CGCGACCGCAAGCTGGACCCGCTGCTGTTCA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184727131026488