Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq4423 257 4e-64 seq10415 113 1e-20 seq7349 113 1e-20 >seq4423 Length=667 Score = 257 bits (284), Expect = 4e-64 Identities = 238/299 (80%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 3600 ATCTGGCGCCAGATCGCGTCCTCGCAACGCCGGCCACCCATCAGGCGCGC-GTGGCTCAC 3658 ||||||||||||||| |||||||| |||| || | |||| ||| |||| ||| Sbjct 298 ATCTGGCGCCAGATCCGATCCTCGCAGAGCCGCCCCTGCTGCAGG-GCGTTGTGGGACAC 240 Query 3659 ATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAA 3718 || |||| |||| |||| | | ||| ||||||||||||||||||||||||||||| Sbjct 239 GTCGAGCTTGATCCGCTGCGCCGCCGGTTTGCCCTTGTTGAAGCGCTCGCCGGTCCAGAA 180 Query 3719 GTCGAAGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTCTT 3778 | | |||| || || |||||| | || ||||| |||||||||| ||| ||| ||| Sbjct 179 GGTGTAGGCCTCGTGTGCCATGCTCGATGGCGTCGAGAAGTAGGTCCGGCGGTACTGCTT 120 Query 3779 GTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTCCAGAAGAA 3838 ||||||||||||||||||||||||||||| || | ||||| | ||||||||||||| Sbjct 119 CTGCATCGCCATGCCGCTGGCGACCTTGTTGAGTTCCTTGAACTTGAAGGTCCAGAAGAA 60 Query 3839 CTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAGGA 3897 ||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||||| Sbjct 59 TTCGTCGAAGTAGAAGTTGCCGTGATAGCCCTGGGCGGTCCGGGCGTTGGTCCCCAGGA 1 Score = 176 bits (194), Expect = 1e-39 Identities = 204/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 3297 GGCACCAGCGGCGGGGCTACCACCACGATGCCCGCGCTGTCGCCGGTCTCGGCCGGGTCG 3356 ||||||| || || || | ||||| |||||||||||||||||| | || |||||||| Sbjct 667 GGCACCATAGGGGGAGCGATTACCACCATGCCCGCGCTGTCGCCGTTTTCCGCCGGGTCA 608 Query 3357 TAGCCGATCCACACAGCGCGGTCGCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCC 3416 ||||| | ||| || ||| || ||| | ||||| |||| || || |||||||| || Sbjct 607 TAGCCCACCCAGACCTGGCGATCACCGAACGGCCGTGCGGCGAAGGGTTTGTAGTCCTCT 548 Query 3417 GCCCACTCGACCCAGCTATCGACCTGACAGGGCTGCAGCATCGTGAGCGGGAATACGCTG 3476 ||||| | |||| || || ||| |||||||||| ||||| || ||||| | ||| Sbjct 547 GCCCAGAGGTCCCAACTGTCCACCATGCAGGGCTGCAACATCGCCAGGGGGAAGATGCTC 488 Query 3477 GCGCTGTCATCCACGAACTCGCACATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCG 3536 || | ||| || | ||||| |||||||||||| || ||| |||||||| ||| || Sbjct 487 GCCCCGTCGTCGATGAACTGGCACATCAGCAGGTTCTGGAAGGCCTCGGCGTCGTACTCA 428 Query 3537 CGGCGCAGTTCCTCGATATCGAACAGGTCACAGCC 3571 | | ||| || || | |||||||| |||||||| Sbjct 427 AGCCTCAGCTCGTCCAGGTCGAACAGATCACAGCC 393 >seq10415 Length=2169 Score = 113 bits (124), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 4896 GAACACTTCCGCAGCACGCTGCCGGACAGCCCGTTCCGCGCCTATGGCGACGTGCTGGCG 4955 |||||| ||||| || | || ||| | | || ||||||||||||| |||||| | Sbjct 2164 GAACACATCCGCGGCCTGGGTCCTGACTCCACCTTTGGCGCCTATGGCGATGTGCTGTCC 2105 Query 4956 GTGAAGGCCGAGGAAGTCGAAATTGCCGGCAAGAAGAAGCTGGCGCTCTTCGCCCAGGTC 5015 ||||| || || ||||| || | |||||||||||| |||||||| ||||||||| || Sbjct 2104 TGCAAGGCTGAAGAGGTCGACATCGACGGCAAGAAGAAACTGGCGCTGTTCGCCCAGATC 2045 Query 5016 GAGCCGACCGACGACCTGGTCGACATGGTCAACGTGCGCAAGCAGAAGGTCTTTACCAGC 5075 |||||||||| | |||| ||||| ||||| |||| |||||| | | ||| | Sbjct 2044 GAGCCGACCGCCACCCTGATCGAC---CTCAACAAGCGCGGCCAGAAGATTTACACCTCC 1988 Query 5076 ATCGAG 5081 ||||| Sbjct 1987 GTCGAG 1982 Score = 91.5 bits (100), Expect = 3e-14 Identities = 184/268 (69%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 5623 AACATTCCGGAGCTACCCCATGCGTACCAAAACCCGCCGCCTGTTCGAGGGCTACACCCA 5682 ||||| ||||| || ||||||||| | | |||||| ||| ||| | | |||| || Sbjct 1306 AACAT--CGGAGA-ACACCATGCGTAACGATACCCGCGTCCTCTTCAACGCCTACCTGCA 1250 Query 5683 GCAGGTTGCCACGCTGAACAACGTCAGCGGTGTGGCCAACACCTTCTCTGTCGAGCCGAC 5742 || | || ||| || ||| |||| || ||| || ||| | | || || | Sbjct 1249 ACAACTCGCGCAACTGCACGGCGTGAGCGACGTCACCACCAAATTCACGGCCGCACCCAG 1190 Query 5743 TGTGCAGCAGAGCCTCGAAGCCCGCATGCAGGAAAGCAGTACCTTCCTGCAG-GCGATCA 5801 || |||| ||| ||| ||||||| ||||| ||| | ||||| ||| || |||| Sbjct 1189 CGTCGCCCAGACCCTGGAAACCCGCATTCAGGAGTCCAGCGCGTTCCT-CAGCGCCATCA 1131 Query 5802 ACATGGTCGGCGTGAACGAACTGAAGGGCCAGAAGGTTGGCGTTGGCATCACCGGCACCA 5861 || | |||||| ||||| | |||| ||||| | ||| | |||||| ||| |||| Sbjct 1130 ACGTTTACGGCGTCTCCGAACAGTCGGGCGAGAAGATCGGCATCGGCATCGACGGGACCA 1071 Query 5862 TTGCCGGCCGCACCGACACCAGCGGCAA 5889 ||||| || ||||||||||| || ||| Sbjct 1070 TTGCCAGCACCACCGACACCACCGTCAA 1043 >seq7349 Length=757 Score = 113 bits (124), Expect = 1e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 26522 ATCGCCAACTGCTACCCCGAGGCGCTCTACTTCCAGCGCCACGAAGCGACCGACGAAAGC 26581 |||||||||||||||||| |||| || || ||||||||| ||||| || ||||| | Sbjct 540 ATCGCCAACTGCTACCCCAAGGCTCTGTATTTCCAGCGCAACGAAATTACGGACGAGTCC 481 Query 26582 TGGTACTACTTCCGCGTTGACTTCCCGCACGACG-CGCCATCGGTAAAGGGTACCTTCAC 26640 ||||||| |||||| || |||||||| ||||||| || | || || ||| |||||||| Sbjct 480 TGGTACTTCTTCCGGGTCGACTTCCCTCACGACGGCGGC-TCAGTGAAGAACACCTTCAC 422 Query 26641 CGGCGCCCAGGTGGCC 26656 ||| | ||||| ||| Sbjct 421 CGGTGGTCAGGTCGCC 406 Score = 93.3 bits (102), Expect = 9e-15 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 26699 GGTGCTGTGTTCAGCGGTAGCGGCCAGCAGCTGGACCGGATGATGGAAGACCAGCTGTTC 26758 || || || |||| ||| |||||||||||| ||||| ||| ||| | |||||||||| | Sbjct 306 GGAGCCGTATTCACCGGCAGCGGCCAGCAGTTGGACAAGATCATGAAGGACCAGCTGTAC 247 Query 26759 AACATCAAAAAGGTCGACACGGTCGACTTCGTCGGGTACAGCCCCGAACACAAGGC--AT 26816 |||||||| || | || |||||| |||||| |||||| ||| || ||| | Sbjct 246 GCCATCAAAACCGTGCAGACCATCGACTACGTCGGCTACAGCAAGGAATAC--GGCTGCT 189 Query 26817 ACATCTTTCCTGACCTGGCCGTGCGCGCCGGCGAGGTCACCCTCGCCAACGCTGAGGACT 26876 || |||| || | ||||| |||| ||| || ||| | | ||||| ||||| | Sbjct 188 ACGTCTTCAACGATATAGCCGTTCGCGAGGGCCAGCTCATCAGCATCAACGAGGAGGAGT 129 Query 26877 ACTTCGAGTTCAACAAGCT 26895 ||||||| | |||||| Sbjct 128 TCTTCGAGATGGGCAAGCT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107140264244488