Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_023729.1 Length=43036 Score E Sequences producing significant alignments: (Bits) Value seq10339 190 6e-44 >seq10339 Length=11660 Score = 190 bits (210), Expect = 6e-44 Identities = 348/509 (68%), Gaps = 3/509 (1%) Strand=Plus/Plus Query 36388 GTGTTCGCCAACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGAT 36447 ||| | | ||||||||||||||| |||| || | ||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 36448 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 36507 ||| | | |||||||| || ||| || || ||||||||| |||| | || | ||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 36508 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 36567 ||||||||||||||| ||||||||| |||| ||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 36568 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 36627 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 36628 ---TTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAGGCG 36684 ||||| || |||| |||| | | |||| || ||| || ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 36685 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACCGAT 36744 ||| | | |||| ||||||| ||| | | ||| | ||| |||| ||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 36745 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCC 36804 |||||||| || ||||||||||| ||||| ||||||| |||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 36805 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 36864 | |||||| ||||| || ||| | ||| | |||| ||| | | || ||| Sbjct 6879 TCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC 6938 Query 36865 AGGTCCCGTGGGTATGCCGACGTACCGGT 36893 ||| || ||||||||||| || || Sbjct 6939 GCCAGCCGCGGCTATGCCGACGTGCCCGT 6967 Score = 161 bits (178), Expect = 3e-35 Identities = 299/429 (70%), Gaps = 15/429 (3%) Strand=Plus/Plus Query 35018 AGGTTGACCCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAGCGCGATCTGGTGCGCT 35077 |||| |||| || ||| | || || || || |||||||||| || | |||| || Sbjct 5053 AGGTCGACCAGGCCGACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCT 5112 Query 35078 GGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGATTGGGCAAGACCGTG 35136 |||| || ||| ||| | ||| ||| | ||| ||| ||||| ||||||||||| | Sbjct 5113 GGGCCATCCGCCTGGGCTGCGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTC 5171 Query 35137 ATGCAGCTGGAGATCGTGCGCCT-GTCCCTGGCGAAGCACGGCGGCGGTAAAGGTCTGAT 35195 ||||| |||||||||||||| | || | || | | | |||||| | || ||||| Sbjct 5172 GTGCAGTTGGAGATCGTGCGCATCGTGCGTGCC----CGCATCGGCGGCATGGGCCTGAT 5227 Query 35196 CGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGA 35255 ||| || |||||||||||||| |||||| || |||||| | || |||||| Sbjct 5228 CGTCATCCCGCTGGGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCAC 5287 Query 35256 AACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGGC---GACGGAATCTATCTCACCAA 35312 | |||| | ||||||| || |||| || || | |||| ||||| |||||||| Sbjct 5288 GGTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAA 5347 Query 35313 CTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGA 35372 ||| || | |||||||| | ||| |||||||| ||||||| | | | || || Sbjct 5348 CTACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGA 5407 Query 35373 CGAGGCGAGCGTG-CTGCGCTCGTTCGG-GTC--CAAGACCTACCAGTCGTTCCTCGAGC 35428 ||||||| || || |||||| ||||| | | |||||||| || |||| | | || Sbjct 5408 CGAGGCG-GCATGCCTGCGCGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGC 5466 Query 35429 TGTTCGACG 35437 |||||| || Sbjct 5467 TGTTCGCCG 5475 Score = 86.0 bits (94), Expect = 2e-12 Identities = 235/351 (67%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 37115 TGTTCACCAAGTACAGCCTGCAGGATGTCTACGACTACCAGTCAC-ACGTCCGCATCGGT 37173 ||||| |||| || ||| || |||||||||| | || ||| |||| |||||||| Sbjct 7099 TGTTCCGCAAGCACTCGCTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGC 7157 Query 37174 GAGCAACTCGAAGGTCGCGGTGCCCTGCCTGCCACGTTCATG--GCCATCGCCCCGGGAT 37231 ||| || | | ||||| ||||| |||| |||||| || ||| | | | Sbjct 7158 GAGGCGCTGGCCGAGCGCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGCAG-AG 7216 Query 37232 CGTGGTCACCTCACGTGTGGCACGACGTGAACCGGATGATCACCTTGAACGGGGAGCAGA 37291 | ||| || |||| ||| |||||||| || ||| ||| | ||| | | |||| Sbjct 7217 C-TGGCATCCGGACGTCTGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAGT 7275 Query 37292 AACGCCGCAACGTCCAA-ATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTG 37350 || || | | | |||||| ||||||| ||||||||||||| | || ||| | Sbjct 7276 CG-GCAGCCGGGCGCGAGATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCG 7334 Query 37351 ATCACTCGTTTCTCGAATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACC 37410 ||||| | | ||| | |||||| ||| | |||||| |||||||| ||| || Sbjct 7335 ATCACCCAGTACTCCATGAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACG 7394 Query 37411 GTGCCGTTGCGGGCTCTGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTG 37461 ||||| | |||||| || || || || |||||||| || ||||||| Sbjct 7395 GTGCCCTACCGGGCTGTGCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137570313315152