Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_023746.1 Length=57387 Score E Sequences producing significant alignments: (Bits) Value seq10339 224 4e-54 >seq10339 Length=11660 Score = 224 bits (248), Expect = 4e-54 Identities = 657/995 (66%), Gaps = 19/995 (2%) Strand=Plus/Plus Query 43475 GTGTTCGTCAACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGAT 43534 ||| | ||||||||||||||||| |||| || | ||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 43535 CTGATTGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 43594 ||| | | || ||||| || ||| || || ||||||||| |||| | || | |||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 43595 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 43654 ||||||||||||||| ||||||||| |||| ||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 43655 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 43714 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 43715 ---TTCGGAAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGAGGCG 43771 ||| | || |||| |||| | | || | || ||| ||| ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 43772 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGAT 43831 ||| | | |||| ||||||| ||| | | ||| | ||| | |||||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 43832 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCC 43891 |||||||| || ||||||||||| ||||| ||||||| ||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 43892 ACCAAGATGGGTGTCGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAAACAGAC 43951 | ||||| ||||| || ||| | ||| | |||| ||| | | || ||| Sbjct 6879 TCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC 6938 Query 43952 AGGTCGAAG-GGATACGCCGACACACCCGTCACCAAATCCAAGGACGAATACACCCGTGC 44010 | | | || || |||||| ||||| || ||| ||| ||| | || | Sbjct 6939 -GCCAGCCGCGGCTATGCCGACGTGCCCGTGGTGAAGGACAAAACCGAGTACTCGCGGCC 6997 Query 44011 CCGTTGGCAGGTGGACGCGCACGCGTTCTGGCG-ATCGAGCGGAAACAGGACACTGACAG 44069 || |||||| | ||||| |||| | | ||| | | || || || || ||||| Sbjct 6998 GCGCTGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAG-GGCGACCGGCTGCTGACGC 7056 Query 44070 CCGACGAGCTCGCCGCGCTGCCACCAGACCAGTTGGCCTCA--CTGTTCACCAAGCACAG 44127 | || ||||| | | || |||| | | | ||| |||||| ||||||| Sbjct 7057 CAGAGGAGCTGGAAGGCCT--CACCCATGCCGACATCTTCAAGCTGTTCCGCAAGCACTC 7114 Query 44128 CCTGAAGGACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTGAGCAACTCGAAGGTC 44186 ||| || ||||||||||| | || ||| |||| |||||||| ||| || | | | Sbjct 7115 GCTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGCGAGGCGCTGGCCGAGC 7173 Query 44187 GCGGTGCCCTGCCTGCTACGTTCATG--GCCATCGCCCCGGGATCGTGGTCACCTCACGT 44244 |||| ||||| | || |||||| || ||| | || | ||| || |||| Sbjct 7174 GCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGC-AGAGC-TGGCATCCGGACGT 7231 Query 44245 GTGGCACGACGTGAACCGGATGATCACCTTGAACGGGGAGCAGAAACGCCGCAACG-TCC 44303 ||| |||||||| || ||| ||| | ||| | | |||| || || | | Sbjct 7232 CTGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAG-TCGGCAGCCGGGCGCG 7290 Query 44304 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 44363 | ||||| ||||||| ||||||||||||| | |||||| |||||| | | ||| | Sbjct 7291 AGATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGATCACCCAGTACTCCA 7350 Query 44364 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 44423 |||||| ||| | |||||| |||||||| ||| || ||||| | |||||| Sbjct 7351 TGAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACGGTGCCCTACCGGGCTG 7410 Query 44424 TGAAACTCGGTCGGCGCGGCCGTGGTGTCGAGCTG 44458 || || || ||||||||||| || ||||||| Sbjct 7411 TGCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Score = 122 bits (134), Expect = 3e-23 Identities = 231/331 (70%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 42119 GACGTTCACCCGATGCTGCTGCCACACCAGCGTGACCTGGTGCGCTGGGCGGTC-GCCGG 42177 ||||| ||||| ||||| ||| |||||| | |||| |||||| || ||| | Sbjct 5067 GACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTG 5126 Query 42178 GGGGCGGCG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACCGTGATGCAGCTGGAGA 42236 || | ||| |||| | ||| ||| ||||| ||||||||||| | ||||| |||||| Sbjct 5127 GG--CTGCGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGA 5184 Query 42237 TCGTGCG-ATTGTCGCTAGCCAAGCATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTG 42295 ||||||| || || || ||| |||| ||| || | || |||||||| || |||||| Sbjct 5185 TCGTGCGCATCGT-GCGTGCCC-GCAT--CGGCGGCATGGGCCTGATCGTCATCCCGCTG 5240 Query 42296 GGGGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTT 42355 || ||||| |||||| || |||||| | || |||||| | |||| | Sbjct 5241 GGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCACGGTCAAGTTCATC 5300 Query 42356 CGCCGTACAGACGAAGTCGGTGGTG---ACGGAATCTATCTCACCAACTATGAGAGTGTC 42412 ||||| | || |||| || | |||| ||||| ||||||||||| || | || Sbjct 5301 CGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATC 5360 Query 42413 CGCGACGGAAAGTTGGACCCGACACTGTTCA 42443 |||||| | ||| |||||||| ||||||| Sbjct 5361 CGCGACCGCAAGCTGGACCCGCTGCTGTTCA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183485741157976