Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10049 114 1e-20 seq12388 107 2e-18 seq11914 98.7 1e-15 seq7750 98.7 1e-15 seq6327 93.3 4e-14 seq5991 91.5 1e-13 >seq10049 Length=10599 Score = 114 bits (126), Expect = 1e-20 Identities = 147/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| |||||||| ||| | || |||| ||| || |||||||| Sbjct 9201 GGTTGACTCCTTCTGAATATTGTAGTCGGAAAGAGT--ACGACCGTCTTCAAGCTGCTTT 9258 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || | ||||||||||| || ||||| ||||||||||| |||||| | Sbjct 9259 CCGGCGAAGATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCC 9318 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| | || | || || || |||| |||| |||||| || || || Sbjct 9319 TTGACGTTCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGG 9378 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || ||||| ||||||||| Sbjct 9379 GTCTTCACGAAGATCTGCATG 9399 >seq12388 Length=21549 Score = 107 bits (118), Expect = 2e-18 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| ||||||||||| || ||| | | | || || |||||||| || Sbjct 15986 GTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCA-TCTTCAAGCTGCTTTCC 15928 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | ||||| ||||| || ||||||||||| || |||||||| ||| ||| || | Sbjct 15927 GGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGGAT-TTTGGCTT 15869 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||| | || || || |||| ||||| ||||| || |||| | Sbjct 15868 TGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTACCAGTCAACG 15809 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || ||||| |||||| Sbjct 15808 TCTTGACAAAAATTTGCATG 15789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| |||||||| || | ||| | | | || || |||| Sbjct 15484 ATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCA-TCTTCAAGCT 15426 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || || |||||||| ||||| || ||||||||||| ||| | Sbjct 15425 GCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTT 15366 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| | || | || || || || | ||||| ||||| || | Sbjct 15365 TGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTACCAG 15306 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || ||||| || ||||||||| Sbjct 15305 TGAGGGTCTTTACAAAGATCTGCATG 15280 >seq11914 Length=36757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | ||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct 2906 CTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTT 2965 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| | | ||| || |||| ||||| || || || || Sbjct 2966 GGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATTGTCTTACCCGT 3025 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 3026 TAGGGTTTTGACGAATATCTGCAT 3049 >seq7750 Length=8304 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| || | ||| | || |||||||| Sbjct 1018 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTG 1077 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | ||| ||||| || ||||| || |||||||| || |||||| Sbjct 1078 CTTTCCGGCGAAGATCAACCGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTT 1137 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||||||| | || || || | |||| |||||| ||||| Sbjct 1138 GGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGT 1197 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 1198 GAGTGTCTTGACGAAGATCTGCAT 1221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || |||||||| || || ||||| ||| | || ||| ||| || |||||||| | Sbjct 2740 GTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGT--ACGGCCGTCTTCAAGCTGCTTTC 2797 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||| ||||| || || || ||||||||||| |||||| || Sbjct 2798 CGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 2857 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || || || |||| ||| | ||| || || || |||| Sbjct 2858 TAACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAG 2917 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 2918 TCTTCACAAAGATTTGCAT 2936 >seq6327 Length=14581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 148712 CGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCT 148771 |||||||| |||| ||| || ||||||| ||| || || | ||||| ||||| Sbjct 6618 CGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGC 6559 Query 148772 GCGCAGCAATTCAAAATCGTAC---TTGTCATCTACGATGCATCGGTTCACGGCGATAGA 148828 | ||| ||| |||| | ||||| ||| || ||||||||||| || || || Sbjct 6558 ATGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGA 6499 Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 |||| |||||| || || ||||| || | ||||| ||||| || | ||| || Sbjct 6498 AGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAG 6439 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||| ||||| || || | || || || || ||| || ||||| || || || Sbjct 6438 ATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTT 6379 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| |||||||| ||| |||||||| | |||| Sbjct 6378 GTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCG 6344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 148712 CGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCT 148771 ||||||| |||| |||||| || |||| ||| || || || ||||| |||||| Sbjct 7107 CGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACAACCTTGGTAATTGC 7048 Query 148772 GCGCAGCAATTCAAAATCGTAC---TTGTCATCTACGATGCATCGGTTCACGGCGATAGA 148828 | ||| ||| |||| | ||||| ||| || | ||||||||| || || || Sbjct 7047 ATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTCTTTGACGAATCGGTTCAGAGCAATCGA 6988 Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 |||| |||||| || || ||||| || | ||||| ||||| || | || || Sbjct 6987 AGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCCGTACAGAG 6928 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||| || || || || | || || ||||| ||| || ||||| || || || Sbjct 6927 ATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTGCAAGCATCTTT 6868 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| |||||||||||| |||||||| | |||| Sbjct 6867 GTAAAGCATGTACGGTATACCAGTTTCAATTTGCG 6833 >seq5991 Length=25932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || | | | ||||| ||||||||| | ||||||||||||||||| || ||| Sbjct 22953 CTGCTTCCCGGAGAAGATGAGTCGCTGCTGGGCAGGAGGGATGCCTTCCTTCTCTTCGAT 23012 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | |||||| || ||| | ||| || |||| | ||||| ||| ||| || Sbjct 23013 CTTCTCCTTGAGACGCGAGACCTTCTCGTTGTGCTCGATGTCGAGTTCGACTTCTTTTCC 23072 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||||| ||||| ||| ||||| Sbjct 23073 GGTCAGAGTCTTTACTTTGATCAGCATG 23100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483334678584480