Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6327 109 1e-18 seq5865 91.5 3e-13 >seq6327 Length=14581 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || ||||| || | |||||||||||| | ||||| || |||||| | | | ||| Sbjct 6002 TTCGCTATTTACGTTGAACCTTGGCATGCTGATATTTTCGAATTCCTCAGATTAAAGAAA 6061 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| |||| |||||| | | || || ||| | ||||||||| |||||||| | ||| Sbjct 6062 AATACTGGATCGGAAGAAGAGCGCGCTCGGGATCTGTTTTATGCATTGTGGATTCCTGAT 6121 Query 110877 TTATTCATGAAACGTGTTCAAGAAAAT-GGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 || |||||| | || || ||||| || | || ||||||||||||||||| || | Sbjct 6122 TTGTTCATGGAGCGCGTGAAAGAAGATAAGGAT-TGGTCTCTTATGTGTCCGCACAAGTG 6180 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 ||||||||| ||||| || || |||| || ||| Sbjct 6181 TCCTGGTCTCCCTGATAGTTACGGGGAAGAATTCGAA 6217 >seq5865 Length=30428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||||||| |||| |||||||||||||| || || ||||| |||| || || Sbjct 20417 GATATTGTTGAGCGACACTTGAATGACAATGACGTTGTCCTTTTCAACCGGCAGCCTTCT 20476 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGA 305413 || || || || ||| ||| | || || || || | |||| ||||| || Sbjct 20477 CTTCACAAGATCAGTATTATGTCCCACCGCGTTAAGGTTGTCCCTGGGAGAACATTCCGG 20536 Query 305414 TTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || || | | ||||||| || || || || ||||||||||| ||||| |||||||| | Sbjct 20537 TTCAACGAATGTGCTTGCACACCATACAACGCGGATTTTGACGGAGACGAAATGAACTTA 20596 Query 305474 CATGTACCTCAATCA 305488 || || |||||| || Sbjct 20597 CACGTCCCTCAAACA 20611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186596083532172