Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq4423 170 5e-38 seq11062 125 2e-24 seq10415 114 3e-21 seq7349 105 2e-18 >seq4423 Length=667 Score = 170 bits (188), Expect = 5e-38 Identities = 222/301 (74%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 9497 ATCTGGCGCCACTGA-CCG-TCAGCGCAGCGCATGCCGTTGC-GCAGCGCGGTGTGGCTC 9553 ||||||||||| || ||| || ||||| || ||| ||| |||| ||| ||||| | Sbjct 298 ATCTGGCGCCA--GATCCGATCCTCGCAGAGC-CGCCCCTGCTGCAGGGCGTTGTGGGAC 242 Query 9554 ACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAG 9613 ||||||| ||||| | | | || | ||||| |||||| | |||||| |||| Sbjct 241 ACGTCGAGCTTGATCCGCTGCGCCGCCGGTTTGCCCTTGTTGAAGCGCTCGCCGGTCCAG 182 Query 9614 AACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCAGTGC 9673 || | ||||||||| || | || ||| || ||||| |||||||| || | || | ||| Sbjct 181 AAGGTGTAGGCCTCGTGTGCCATGCTCGATGGCGTCGAGAAGTAGGTCCGGCGGTACTGC 122 Query 9674 TTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAG 9733 || || |||||||||||| ||||||||| ||||||| ||| ||||||| Sbjct 121 TTCTGCATCGCCATGCCGCTGGCGACCTTGTTGAGTTCCTTGAACTTGAAGGTCCAGAAG 62 Query 9734 TACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGGTCCCGAGG 9793 | ||||||||||| | ||||||||| |||| ||| ||||| |||||||||||||| ||| Sbjct 61 AATTCGTCGAAGTAGAAGTTGCCGTGATAGCCCTGGGCGGTCCGGGCGTTGGTCCCCAGG 2 Query 9794 A 9794 | Sbjct 1 A 1 Score = 104 bits (114), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 9251 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAG 9310 ||||| ||||| ||||| ||| | || | ||||||||||| | ||||| || | || Sbjct 613 GGGTCATAGCCCACCCAGACCTGGCGATCACCGAACGGCCGTGCGGCGAAGGGTTTGTAG 554 Query 9311 TCCTC---CCATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCATCGAGAGCGGAAAC 9367 ||||| ||| | ||||| |||||||||| | | || | ||||| || || || Sbjct 553 TCCTCTGCCCAGAGGTCCCAACTGTCCACCATGCAGGGCTGCAACATCGCCAGGGGGAAG 494 Query 9368 ACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTTCGCTG 9427 | | ||| ||||||||||||| ||||||||||||||| ||| | || | Sbjct 493 ATGCTCGCCCCGTCGTCGATGAACTGGCACATCAGCAGGTTCTGGAAGGCCTCGGCGTCG 434 Query 9428 TACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCC 9468 ||||| |||| || || ||| | ||||||||| | ||||| Sbjct 433 TACTCAAGCCTCAGCTCGTCCAGGTCGAACAGATCACAGCC 393 >seq11062 Length=2017 Score = 125 bits (138), Expect = 2e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24714 GCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGACCGAGCTGGTCAC 24773 ||||||||| || | ||||| || |||||||||||||| || | |||| |||||| | Sbjct 261 GCCGCGCATTCTTGGCGTGCCAGGCCTCGACAGCCTGCCGGTAGCCACCGCCCTGGTCTC 202 Query 24774 CATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGG--CTGCCAGACTAAG 24831 |||| ||| || |||| |||||| ||| |||| ||| || | || |||| || Sbjct 201 GATCGGCCAGCAGTTGCGGGCCTTCTGCTA--TGTCAGCGCCTGGGACAGCAAGACCAAA 144 Query 24832 GAAGAGGCCGTCGCCTATCGCAGTAACTTCGGCCAGCGCGAAGCGATGGTGATGTGGCCG 24891 || || ||||||||||| ||| |||||||| || ||||| |||||||| ||||| Sbjct 143 GAGGAAGCCGTCGCCTACCGCGAGAACTTCGGTGCACGAGAAGCAATGGTGATCTGGCCT 84 Query 24892 GATTTCGTCGGCTGGGACACCGCCGCCAACGC 24923 || ||| |||| ||||| || ||||||| Sbjct 83 GACTTCCAAAACTGGAACACCACCACCAACGC 52 Score = 96.9 bits (106), Expect = 9e-16 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 24439 GCCGATGATGCCGA--CGCGGCCACCTTCCCGCTCGACACCCCCGTCCTGCTGACCAACC 24496 ||||| || ||||| ||| | || ||||||||||| ||||| ||||||||||||||| Sbjct 634 GCCGACGACGCCGATCCGCTGGCA--TTCCCGCTCGATACCCCGGTCCTGCTGACCAACG 577 Query 24497 CGCAGGCCTACATCGGCAAGGCCGGCAACAAAGGCACGCTCGCCCGCACGCTCGATGCCA 24556 ||| || |||| || ||||||| ||| ||||| || | | || ||| | |||| Sbjct 576 TTCAGACCGCGGTCGGTAAAGCCGGCACCAAGGGCACCCTGGGCGCCAGTCTCCAGGCCA 517 Query 24557 TCACCGACCAGACCAACCC 24575 || ||||||||||||| || Sbjct 516 TCGCCGACCAGACCAAGCC 498 >seq10415 Length=2169 Score = 114 bits (126), Expect = 3e-21 Identities = 247/364 (68%), Gaps = 14/364 (4%) Strand=Plus/Minus Query 11440 CCGCCCGCCCGCCGGCCACGGGCGGCGCCGGCGCACCCATCACGACCGATTGCTGACCCG 11499 |||| ||||| |||| ||||| || | ||| || | | |||| ||| |||||| || Sbjct 1387 CCGCTCGCCCCGCGGCTACGGGTGGTGACGGGGCTCTCGTCAC---CGACTGCTGATCCC 1331 Query 11500 GCCACCGGCCCGCAGCACACCAACCAGACCACACACCGGAGTCAACACAATGCGCAACGA 11559 ||| | | ||||||| | | | ||| ||||| ||||| ||||| ||||| Sbjct 1330 AACACGGACA------ACACCAAGCCAAGGA-ACATCGGAG--AACACCATGCGTAACGA 1280 Query 11560 AACCCGCCGCCTCTTCACGGCTTACAAGGACGCAATCGCCAAGCTCAACGGCGTGGCTCG 11619 |||||| |||||||| || ||| | | | |||| | || |||||||| Sbjct 1279 TACCCGCGTCCTCTTCAACGCCTACCTGCAACAACTCGCGCAACTGCACGGCGTGAGCGA 1220 Query 11620 CGTTGATGAGAAGTTCAGCGTCGCGCCGAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCA 11679 ||| || |||| | ||| || |||||| |||| ||||| ||| |||| Sbjct 1219 CGTCACCACCAAATTCACGGCCGCACCCAGCGTCGCCCAGACCCTGGAAACCCGCATTCA 1160 Query 11680 GGAGTCGAGCGATTTCCTGACCCGCATCAACTTCTATGGCGTGCCCGAACAGGAAGCCGA 11739 |||||| |||| ||||| | | ||||||| | || ||||| |||||||| | ||| Sbjct 1159 GGAGTCCAGCGCGTTCCTCAGCGCCATCAACGTTTACGGCGTCTCCGAACAGTCGGGCGA 1100 Query 11740 AAAGATCGGCCTGGGCGT-GTCGGGCCCGGTGGCAAGCAACACCGACACCACCCAGCAGG 11798 ||||||||| | ||| | | |||| || || || ||| ||||||||||||| ||| Sbjct 1099 GAAGATCGGCATCGGCATCGACGGGACCATTGCCA-GCACCACCGACACCACCGTCAAGG 1041 Query 11799 ACCG 11802 |||| Sbjct 1040 ACCG 1037 Score = 98.7 bits (108), Expect = 3e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 12433 CCGTCGCACGATCCTGGACAACGCGAAGCGCGATCGCATCGAGAACTACGAGTCGAGCAA 12492 ||| ||||| || | ||||| || || ||||| ||||||||||||| ||| ||| ||| Sbjct 124 CCGCCGCACCGTCGTCGACAATGCCAAACGCGACCGCATCGAGAACTTCGAATCGGTCAA 65 Query 12493 CGACGCGTACGTGATCGAAGACCTGGCGTGCGCAGCCATGGCCGAGAACATC 12544 || || |||||||||||||||| ||||| ||||||||||| |||||| Sbjct 64 TGAAAGCTATGTGATCGAAGACCTGGGCTGCGCTGCCATGGCCGAAAACATC 13 Score = 86.0 bits (94), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 11981 AACGGTGTCAGCCGAGCCGCCACGTCCAATCGGGTGGTCAACCCGATGCTCCAGGACGTG 12040 ||||| |||||| ||||| || ||||| | ||||||| || | ||||||||| Sbjct 781 AACGGCACCAGCCGCGCCGCGACCTCCAACCCATCTACCAACCCGCTGTTGCAGGACGTG 722 Query 12041 AACAAAGGCTGGCTGCAGAACCTGCGC---GAACAGGCGCCGCAGCGCGTCATGGAGGAA 12097 |||| |||||||||||||| ||||| ||| | |||||| ||||| || | ||| Sbjct 721 AACATTGGCTGGCTGCAGAAAATGCGCCTGGAAAA--CGCCGC-TCGCGTGTTGCACGAA 665 Query 12098 G-GCAAAAAAGCGGCCGGCAAGATCATCGTCGGCGCGGGTGGGGACTACGGCAACCTGGA 12156 | | | || | |||||||||| |||||||||| ||| | || ||| | || Sbjct 664 GTGGTCGACGGCAG-CGGCAAGATCCAGATCGGCGCGGGCAAGGATTTCGAAAACATCGA 606 Query 12157 CGCCCTGGTGTTCGACGTCGTGAACCAGCTGGTCGAGCCGTGGTAC 12202 ||||||||| || | | || ||| || | | ||||| |||||| Sbjct 605 CGCCCTGGTCGTCAGCATGGTCAACGAGTTCATTGAGCCCTGGTAC 560 >seq7349 Length=757 Score = 105 bits (116), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 36849 ACCGTGCAGACCATCGATTACATGGGCTACAGCAAAGAGCACGGCTGCTACGTCTACGGC 36908 ||||||||||||||||| ||| | ||||||||||| || ||||||||||||||| | | Sbjct 237 ACCGTGCAGACCATCGACTACGTCGGCTACAGCAAGGAATACGGCTGCTACGTCTTCAAC 178 Query 36909 GATGTCGCCGTCAAGGACGGCCGGCTGTACCGCCTCAATGACGAGGATTTTTTCGACATC 36968 ||| | ||||| || |||| ||| | || |||| || ||||| || ||||| || Sbjct 177 GATATAGCCGTTCGCGAGGGCCAGCTCATCAGCATCAACGAGGAGGAGTTCTTCGAGATG 118 Query 36969 GGCAAGCT 36976 |||||||| Sbjct 117 GGCAAGCT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127863156456736