Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq12388 102 7e-17 seq13049 86.0 6e-12 >seq12388 Length=21549 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || || || || ||| ||||||| |||||||||||||| Sbjct 15789 CATGCAAATTTTTGTCAAGACGTTGACTGGTAAAACGATCACCCTCGAAGTCGAAGCCTC 15848 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || | || ||| | || ||| ||||| || || ||||| || || |||||||| Sbjct 15849 AGACAGCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGAATCCCTCCCGATCA 15908 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | ||||| | || ||| || || || ||||||| | | |||| |||||| Sbjct 15909 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTGTC--TGATTAC 15966 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || ||||| || |||| || || Sbjct 15967 AATATTCAGAAGGAATCGACTCTTCACTTGGT 15998 >seq13049 Length=11502 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | || || || || | || || ||| ||||||| ||||||||||||| Sbjct 9850 CAACATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGC 9909 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || | || ||| | || ||| ||||| || ||||| || | || || || Sbjct 9910 CTCAGACAGCATTGAGAACGTCAAAGCTAAAATCCAGGACAAAGAAGGAACCCCTCCAGA 9969 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 |||||| | || || | | ||||||||||| ||||| | | | |||| ||| Sbjct 9970 CCAGCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGACGGCCGCACCTTGTC--CGAC 10027 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || ||||||||||| || |||| || || Sbjct 10028 TACAACATCCAAAAAGAATCGACTCTTCACTTGGT 10062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445015106432640