Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3577 143 4e-28 seq676 127 3e-23 seq7778 125 1e-22 seq2569 114 2e-19 seq10993 111 2e-18 seq2007 104 3e-16 seq13096 91.5 2e-12 seq7621 87.8 3e-11 >seq3577 Length=21504 Score = 143 bits (158), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||| ||||||||||||||||||||| |||| |||| || ||| ||| Sbjct 12956 TCTACCGTGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCGAAGGCCA 13009 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||| |||||||||||||| ||||||||| | |||| ||||||| | ||| || | Sbjct 13010 TGTCCATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCCGGCGAAGCTTCGC 13069 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | || |||| || |||||||||| || || | | || || || ||||| | |||| Sbjct 13070 GTCTTGCGCACTACAACAAGCGCTCGACCATTTCCTCTCGGGAAATTCAGACTTCTGTGC 13129 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| | | ||| ||||| |||| |||||||||||| |||||||||| Sbjct 13130 GTCTCATCCTCCCCGGAGAACTCGCCAAGCACGCCGTCTCTGAGGGCACCA 13180 >seq676 Length=604 Score = 127 bits (140), Expect = 3e-23 Identities = 177/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || ||||| ||||||||||| |||||||| |||| | Sbjct 251 TCGTACTCCGTCTACGTCTACCGTGTGCTCAAGCAAGTGCACCCTGACACCGGA-----A 197 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || ||| ||||||||||||||||||| || ||||| ||| | | || ||||| Sbjct 196 TC-TCGTCGAAGGCCATGTCGATCATGAACTCATTCGTCAATGACGTCTTTGAGCGCATA 138 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | || ||| ||| |||| || || | || |||||||||| || ||| | ||||| Sbjct 137 GCCAACGAAGCCAGTCGTCTCGCACACTACAACAAGCGCTCGACCATCTCGTCCCGCGAA 78 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| | || ||||| || | | |||||| |||||| ||||||||| ||||| Sbjct 77 ATCCAGACATCTGTACGCCTTATTCTCCCCGGCGAGTTGGCCAAGCACGCCGTATCCGAA 18 Query 725136 GGCACCA 725142 || |||| Sbjct 17 GGAACCA 11 >seq7778 Length=8617 Score = 125 bits (138), Expect = 1e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||| || |||||||||||||||||| |||| | ||||||||| || ||| Sbjct 1273 TCTACCGTGTCCTCAAGCAGGTGCACCCCGACACCG---GCATATCCTCCAA--AG-CCA 1220 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||| ||||||||||| |||||||||||| | |||| || |||| |||||| | Sbjct 1219 TGTCCATCATGAACTCCTTTGTCAACGACGTCTTCGAGCGTATCGCTCAGGAGGCCTCCC 1160 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | || || | || |||||| || || ||| | ||||| || || || |||| | Sbjct 1159 GACTCGCCCACTACAACAAACGTTCAACTATCTCGTCCCGCGAAATTCAAACTTCCGTCC 1100 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | ||| ||||| |||| ||||||||||||||| ||||||| Sbjct 1099 GTCTTATTCTCCCCGGTGAACTCGCCAAGCACGCCGTCTCCGAAGGCACCA 1049 >seq2569 Length=10691 Score = 114 bits (126), Expect = 2e-19 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 |||||||||||||| |||||| |||| |||| ||| ||||||| ||| Sbjct 3197 GTGCTCAAGCAGGTCCACCCCGACACCGGAATCTCATCG------AAGGCCATGTCCATC 3250 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||| |||||||| ||| | |||| ||||||| |||||||| ||| || || Sbjct 3251 ATGAACTCCTTTGTCAATGACGTCTTCGAACGCATCGCTACCGAGGCTTCTCGTCTCGCT 3310 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | ||||||||| ||||||| | ||||| ||||| | |||| || || ||| Sbjct 3311 CATTACAACAAGCGATCCACGATCTCGTCCCGCGAAATCCAATCTTCCGTCCGTCTCATC 3370 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| || || | | ||||||||| || ||||| |||| Sbjct 3371 CTTCCCGGAGAGTTGTCGAAGCACGCCGTTTCTGAGGGAACCA 3413 >seq10993 Length=14660 Score = 111 bits (122), Expect = 2e-18 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| | ||||| |||||||| || || ||||||||| | | || ||||||| Sbjct 10679 CTCCTCCAAGGCGATGTCAATCATGAATTCCTTCGTCAACGACGTCTTTGAACGCATCGC 10620 Query 725018 CACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | || ||| ||| || || | | ||||||||| |||||| | ||||||| Sbjct 10619 CGGTGAAGCC--TCGAAGCTCGCACAGTACAACAAGCGTTCGACGATCTCCTCGCGCGAA 10562 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||| |||| || ||||| ||| || || |||||| |||||||||||||||| Sbjct 10561 ATCCAAACCTCCGTCCGGCTGATTCTGCCTGGAGAGTTGGCCAAGCACGCCGTCTCCGAG 10502 Query 725136 GGCACCA 725142 || |||| Sbjct 10501 GGAACCA 10495 >seq2007 Length=27052 Score = 104 bits (114), Expect = 3e-16 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 |||||||||||| |||||||| || || || ||||| | |||||||||||||| || Sbjct 25382 GACGAGATGGTGCTCGTGCGCGACATCGAGTTCTTCTCGCTCTGCGAGCACCACCTTGTG 25323 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGC 2133677 ||||| ||||| || | ||| | || ||||||||| ||||| | || || ||| Sbjct 25322 CCCTTCATCGGAAAAGTGCACATCGGATACCTGCCCAACAAGAAGATTCTGGGGCTCAGC 25263 Query 2133678 AAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACG 2133737 ||| || | ||| |||| || ||||| || || | || || |||||| ||||| Sbjct 25262 AAGCTCGCTCGCGTCGTTGAGATGTTCGCCCGTCGTCTTCAGGTGCAGGAGCGTCTCACA 25203 Query 2133738 CGCCAGATCGCC 2133749 ||||||||| Sbjct 25202 AAACAGATCGCC 25191 >seq13096 Length=950 Score = 91.5 bits (100), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 ||||||||||||| || ||||| || || | | || |||||||||||||||||||| Sbjct 385 GACGAGATGGTGATCGTACGCGACATCGAGCTGTATTCGTTGTGCGAGCACCACCTGCTG 444 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGG 2133657 || || ||||||||||| ||||| | |||| | ||| ||| Sbjct 445 CCGTTCATCGGCAAGGCGCACGTTGCCTACATCCCCACGG 484 >seq7621 Length=1292 Score = 87.8 bits (96), Expect = 3e-11 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 2144683 GGTCATGGCCAGCGACGCCTACTTTCCCTTTCCCGACGGCCCGAGCAAGGCCATCGCCGG 2144742 ||||||||| ||| || | ||| || || | |||||||| | ||| ||| | | Sbjct 178 GGTCATGGCTTCCGATGCGTTCTTCCCGTTCCGCGACGGCCTGGACAACGCCGCCAAGGT 119 Query 2144743 CGGCGTCGTCGCCATCGTGCAGCCGGGCGGCTCACGCGGCGGCGACAA-GCCTCGATCGC 2144801 |||| || ||| | | |||||||||||||| | ||| ||||| | ||| || Sbjct 118 CGGCATCACCGCGGTGATCCAGCCGGGCGGCTC--GATGCGT-GACAACGAAGTGATTGC 62 Query 2144802 CGTCTGC-GACGAGGCCGGCGTCGCCATGGTCTTTACCGGCATGCGCCATTTCCGTCACT 2144860 || |||| ||||| || ||| | |||||||| || |||||||||||||| |||||||||| Sbjct 61 CG-CTGCCGACGAAGCGGGCATTGCCATGGTGTTCACCGGCATGCGCCACTTCCGTCACT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176436568404824