Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7750 107 2e-18 seq8226 95.1 1e-14 seq12388 91.5 1e-13 seq13049 86.0 6e-12 seq10049 84.2 2e-11 >seq7750 Length=8304 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| | | | || | ||| | || |||||| ||||||||||| ||| Sbjct 764 TTTCCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCG 823 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | || || |||| || |||||||| || || || ||||| || ||||| || | | Sbjct 824 GAGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGA 883 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| | || |||||| |||||| ||| | | || | | |||||| || ||| Sbjct 884 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCG 943 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| | ||||| ||||| || || | || || || || |||||||||| Sbjct 944 ACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCATTC 995 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | || |||||||| || || |||||| |||||||||||||||| Sbjct 1495 TTCCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGG 1554 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || || ||||| || || || ||||| |||||||| || | | Sbjct 1555 AGAGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCG 1614 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| ||| |||||| ||| | | | | |||||| | ||| | Sbjct 1615 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCAA 1674 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | || || || || |||||||||| Sbjct 1675 CTTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCATTC 1725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||||||||| |||| | || || |||| || |||||||| || || || Sbjct 2745 CTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 2804 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| ||||| | |||| | ||||||||| |||||| ||| | | Sbjct 2805 GATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 2864 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| ||||| | || || || || || || | ||| ||||| Sbjct 2865 CTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCAC 2924 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 2925 AAAGATTTGCAT 2936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 35583 CGTCCAGCTG-CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 ||||||| | |||||| || || ||||| ||||| ||||| | |||| | |||||| Sbjct 1341 CGTCCAGATTACTTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTG 1400 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||| || ||| | | || | | ||||| || ||| ||||| | || || Sbjct 1401 TCCTGGATTTTGGCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATG 1460 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || ||||||||||| || || |||||||||| Sbjct 1461 GTCTTTCCGGTCAAAGTTTTTACGAAGATCTGCATTC 1497 >seq8226 Length=1064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | | ||| || | || |||| ||| || || || || Sbjct 821 CTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAA 880 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||||||| ||||| ||| | | Sbjct 881 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 940 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | || | ||| || || | ||||| |||||||| ||||| || || || Sbjct 941 TTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGAC 1000 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1001 AAAGATTTGCAT 1012 >seq12388 Length=21549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||| |||||||| | || ||| || | || || |||||||| || || || Sbjct 15980 TCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAG 15921 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| || || | ||| | | |||||||||| ||| ||| |||| ||| Sbjct 15920 ATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGGAT-TTTGGCTTTGACGTT 15862 Query 35666 GCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 || | |||| | ||| || || | |||||||||||||| ||||| || || || Sbjct 15861 CTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTACCAGTCAACGTCTTGAC 15802 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 15801 AAAAATTTGCAT 15790 >seq13049 Length=11502 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || | || || || || || || ||||| Sbjct 7385 CTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAA 7326 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | ||||| || ||| |||||| ||| || ||| | | Sbjct 7325 GATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTGACGTT 7266 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||| | ||| || || | |||||||||||||| || | || ||||| Sbjct 7265 TTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCAC 7206 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 7205 GAAGATCTGCAT 7194 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||| |||||| || |||| || || || || || ||||| Sbjct 10044 TCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAG 9985 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | ||| | || |||||| ||| ||| |||| ||| Sbjct 9984 ATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTTGTCCTGGAT-TTTAGCTTTGACGTT 9926 Query 35666 GCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 || | |||| | ||| || || | |||||||||||||| || | || ||||| Sbjct 9925 CTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCAC 9866 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9865 GAAGATCTGCAT 9854 >seq10049 Length=10599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| ||||| |||| | || || |||| || |||||||| || || || Sbjct 9207 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 9266 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | ||||||||| |||||| ||| | || Sbjct 9267 GATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 9325 Query 35665 TGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | || | | || | ||| || || | ||||| |||||||| || | || |||| Sbjct 9326 TCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCA 9385 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 9386 CGAAGATCTGCAT 9398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450713291120160