Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_026588.1 Length=60285 Score E Sequences producing significant alignments: (Bits) Value seq10339 219 2e-52 >seq10339 Length=11660 Score = 219 bits (242), Expect = 2e-52 Identities = 1180/1854 (64%), Gaps = 145/1854 (8%) Strand=Plus/Plus Query 43939 ACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGGGCGGTC-GCCGGGGGGCGG 43997 ||||| ||||| |||||||||| | |||| ||||| || ||| ||| | | Sbjct 5074 ACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTGGG--CTG 5131 Query 43998 CG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATCGTGCG 44056 || |||| | ||| ||| ||||| |||||||||| | ||||||||||||||||||| Sbjct 5132 CGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGATCGTGCG 5191 Query 44057 CCT-GTCCCTGGCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGC 44115 | | || | || | ||| |||||| | || |||||||| || |||||||| |||| Sbjct 5192 CATCGTGCGTGCCC--GCAT--CGGCGGCATGGGCCTGATCGTCATCCCGCTGGGCGTGC 5247 Query 44116 GGATCGAGTTCGCCCACGACGCCAACATGC-TGGGCATTGAAACCCGGTTCGTTCGCCGC 44174 | |||||| || |||||| || || | ||||| | |||| | |||||| Sbjct 5248 GTCAGGAGTTCATCCGCGACGCGG-CACGCCTTGGCATCACGGTCAAGTTCATCCGCCGC 5306 Query 44175 ACAGAAGAAGTCGGCGGCG---ACGGTATCTATCTCACCAACTATGAGAGTGTCCGCGAC 44231 | || |||| || || | |||| ||||| ||||||||||| || | |||||||| Sbjct 5307 ATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATCCGCGAC 5366 Query 44232 GGAAAGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGGCGAGCGTGC-TGCG 44290 | ||| |||||||| ||||||| | | | || ||||||||| || ||| |||| Sbjct 5367 CGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGACGAGGCG-GCATGCCTGCG 5425 Query 44291 CTCGTTCGG-GTC--CAAGACCTACCAGTCGTTCCTCGAGCTGTTCGACGGGG------- 44340 | ||||| | | |||||||| || |||| | | |||||||| ||| | Sbjct 5426 CGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGCTGTTCGCCGGCGACGACCG 5485 Query 44341 -----------------------------------TGCCCTACCGGTACGTCGCCACCGC 44365 |||| || || | ||| ||||| || Sbjct 5486 GCGCGACATGGCCAACCGCGTGAAGAGCGCTGGCGTGCCGTATCGCTTCGTGGCCACGGC 5545 Query 44366 CACACCCTCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGAT 44425 ||| ||| || ||| || |||||| | |||| | || || || ||||| Sbjct 5546 CACGCCCAGTCCAAACGAGTTTGTCGAGCTGCTGGCCTACAGCGCCTTCCTGGGCGTGAT 5605 Query 44426 GGACACCGGTGCGGCGCTCACGCGTTGGTTCCAACGGGACTCCACGAAGGCGAACAACCT 44485 |||| || ||| ||||||| ||| | || || | |||||| ||||||| Sbjct 5606 GGACGTTGGCCAGGCCAAGACGCGTTTCTTCAAGCGCAACAGCGAGAAGGCCGACAACCT 5665 Query 44486 CACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACCTGGGCGGCGTT 44545 || || ||| || | ||| |||||||||||| || | |||||| ||| Sbjct 5666 GACGCTGAGCCCAGCGCGCGAGCGCGACTTCTGGCTGTGGGTGGCAAGCTGGGCCCTGTT 5725 Query 44546 CGTGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTACGACCTGCCGCCGCTGGA 44605 |||||| || | |||||||| || || | ||||||||| |||||||| | || Sbjct 5726 CGTGCAGAAGCCCTCGGACCTCGGCTACAGCGACGACGGCTACGAGCTGCCGCCCATCGA 5785 Query 44606 GGTGTTGTGGCATGAGGTTGATCCGCCGGCCGATGACTTCGAT--TTCGAGCGTG-ACGG 44662 | ||||| ||| | ||| ||| | | | | || | | | | || |||| Sbjct 5786 CATCCGCTGGCACGAGATC---CCGGCGGACCACGCCGACGCTGGTACCAATATGGACGG 5842 Query 44663 GCAGGGCCAGTTGGT---GCGCGGGGTGAACCTCGGGTTGCCGCAGGCTGCGGCCGAGAA 44719 |||| ||| || | |||| || | |||| || | | || ||| |||||| Sbjct 5843 CCAGGCGCAGATGTTCAAGCGCCAGGCCA---TCGGCGTGGTGGACGCGGCGCGCGAGAA 5899 Query 44720 GCGCCGGTCGCTGGATGCTCGGCTGTCCAAGCTGGTCGAGATCGTCACCGACCACGCCGA 44779 |||| |||||||| || || ||||| || | ||| | | |||| || ||| Sbjct 5900 GCGCGACAGCCTGGATGCGCGCGTGGCCAAGATGATGGAGCTGCGCGCCGAGGAC-CCGG 5958 Query 44780 ACACGGTGAGGGCCAGATTGTGATCTGGTGCGACCTCAACGACGAGCAGCGCGCCATCGA 44839 | | ||| |||||||||| |||||| | || |||| ||||||||||| Sbjct 5959 CCGC--------CCACCGTGTGATCTGGCACGACCTGGAGGATGAGCGCCGCGCCATCGA 6010 Query 44840 GAAGGCCCTCGAGGACGCTGGGTTGAGCTTCTCATCGGTGTACGGGTCACTCGACCCGGA 44899 | ||| || | ||| || | || || | ||||| | | |||||||| Sbjct 6011 GCGCGCCATCCCG-ACG---------GCCGC-CAGCG-TCTACGGCACCCAGGACCCGGA 6058 Query 44900 ---CGAGGTGGAGCGCCGCCTGGCCGACTGGAAGAACCGCGACACCTACGCGCTGATCGG 44956 |||| |||| || ||| | || | | || | | | | ||||| | | Sbjct 6059 GACCGAGCGCGAGCCCCTGGTGGTGGCCTTCAGCGATGGCCTGATCCAGGAGCTGAGCAG 6118 Query 44957 CAAACCGGTGATGCTTGGGCAGGGCATG-AACCTGCAACAGGCCCATGTCTGTG---TCT 45012 ||| || ||| |||| |||||| | || |||||||| | | | | ||| | ||| Sbjct 6119 CAAGCCCGTGCTGCT-GGGCAGCGGCTGCAACCTGCAGCGGCACTGCGCCTGGGCGATCT 6177 Query 45013 ACATCGGCATCACACACAAGTTCAACGACCTCATCCAAAGCTTGCACCGGATCCAGCGGT 45072 || | |||||| ||||||| |||| ||||||| ||||||| ||||||| | Sbjct 6178 ACCTGGGCATCGGCTTCAAGTTCGCCGACTTCATCCAGTCGGTGCACCGCCTCCAGCGCT 6237 Query 45073 TCGGCCAAACCCACCCC-TGCACAGCCCATTTGATCCACTCCGAAACCGAACGGGAAGTG 45131 || || || | || ||| || | | ||||| || |||| |||| || || ||| Sbjct 6238 TCCTGCAGACGCGCCAGGTGCGCATCG-ACCTGATCTACACCGAGGCCGAGCGCGAGGTG 6296 Query 45132 GTGCGGGTCATC---CGCGAGAAATGGGCACAACACCGAGAGT---TGACATCAACG-AT 45184 ||| | | ||| |||||||| || ||| ||| || || || || Sbjct 6297 CGCCGGACCCTGGAACGC---AAATGGGCCCAGCACAAGGAGCAAGTGGCA----CGCAT 6349 Query 45185 GACCACCATCATCCACGAGTATGGACTTGACCC-CGAGGCAAT--TTCGGAAGCGCTGCA 45241 ||| |||||| | || | || ||| | | || ||| || | | || ||||| Sbjct 6350 GACGGAAATCATCAAGGAATTCGGG-TTGTCGCACGCGGCCATGATCCAGA--CGCTGAG 6406 Query 45242 ACGCTCCATCGG-GTGCGAACGCATCGAAGCCTCCG-GCGAGGGCTGGC-------TGTT 45292 ||| |||| || ||| || ||| |||| | | || ||| || ||| || | Sbjct 6407 CCGCGCCATGGGCGTG-GAGCGCGTCGAGG--TGCGCGCGCCGGGCGGCGAGTACGTGCT 6463 Query 45293 CGCCAACAACGACTGCGTACCCGAAACCAACAGCATGGCAGACAATTCGGTGGACCTGAT 45352 | ||||||||||||||| ||| || | ||||||| | | |||| |||| | Sbjct 6464 GGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGCCTGGT 6523 Query 45353 CGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGG 45412 | |||||||| || ||| || || ||||||||| |||| | || | ||||||||| Sbjct 6524 GCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGACTTCGG 6583 Query 45413 CCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAACTGCT 45472 |||||||||| ||||||||| |||| ||||||||||| ||| |||| | ||||| Sbjct 6584 CCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAGCTGCT 6643 Query 45473 GCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTG---TT 45529 |||| | || ||| || || | |||| ||| |||||| |||||||| || Sbjct 6644 GCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTGCCCAG 6703 Query 45530 CGGCAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGAGGCGATCTT 45589 ||||| || |||| ||| | | |||| | ||| ||| ||| || | ||| Sbjct 6704 CGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACCATCGC 6763 Query 45590 CCACGGCCGCAAACACGGCTTCGACTACCT---CGGCATGATCATCGTGGTCACCGATGT 45646 | | |||| ||||||| ||| | | | ||| || |||| |||||||| || Sbjct 6764 CTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATC---GTCACCGACGT 6820 Query 45647 GGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 45700 |||||| || ||||||||||| ||||| ||||||| |||||| ||||| || Sbjct 6821 GGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGA 6874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192757771670728