Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq9889 228 2e-55 seq12872 138 3e-28 >seq9889 Length=1737 Score = 228 bits (252), Expect = 2e-55 Identities = 250/331 (76%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 1705 AACGC-ATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGACACGGTGTACAGCG 1763 ||||| ||| ||||||| | |||||||| |||||||| |||||||||||||| ||||||| Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 1764 TCGAGAAAACTGAAGATCGCCGGACCGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCG 1823 | ||| | | ||| |||| || | ||||| || || ||||||||||||| ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 1824 TCCTGACCGTTACCGATGGTGCAGAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAG 1883 | |||||||| || || || || || || ||||| ||||||||||| ||||| |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 1884 CGGCGAACAAAATCAGCCCGGTCAGCGAGTCACCCATCGACCCCTTCGGGGCGACCGGGC 1943 ||| | | | | |||||||| || | || || || |||||||||||||| || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 1944 TCTCACATGACCTTGCTGATGAAGACCTGAATCCCGTCACTATCGTCCAGAACTTCACCA 2003 | || |||| | || ||||||| | | || || ||| || ||||||||| ||| Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 2004 ATATGTCCGATCCGATGAAAGAGCTGGAAGC 2034 | ||| ||| |||||||| ||||||||||| Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 172 bits (190), Expect = 1e-38 Identities = 151/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1505 GTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTG 1564 ||||||||||| || ||||| ||||||||||| || || || |||||| ||||| || Sbjct 17 GTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATG 76 Query 1565 GTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCG 1624 ||||||||| | ||||| || | || ||||| || || ||||||||||| || || Sbjct 77 GTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCC 136 Query 1625 TGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTAT 1684 || |||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 137 TGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTTT 196 Query 1685 ACCCGTGA 1692 |||||||| Sbjct 197 ACCCGTGA 204 Score = 100 bits (110), Expect = 7e-17 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2066 GGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAAACATGCCGGGTAAC 2125 ||||| || || ||| |||||||||| ||||||||||| || |||| || || || Sbjct 676 GGCAACCCGATTATGGCCTGGTGTATTGGCAACGTGGTGGGGAAAACGCTGGGCGGGAAT 735 Query 2126 GATGATGTGGTGAAGCCTGTCAAGGAGCAGGCGGAAAACAAAATTGACGGTGCAGTTGCG 2185 ||||| | ||| ||| ||||||||||| ||| | |||||||||||| || || || Sbjct 736 GATGACATTGTGCGGCCCATCAAGGAGCAGAAGGACAGCAAAATTGACGGCGCGGTGGCC 795 Query 2186 CTGATTATGGCGGTTGGCAGAGCCATGCTG 2215 ||||| |||||| | || | || || ||| Sbjct 796 CTGATAATGGCGATGGGGCGCGCTATCCTG 825 >seq12872 Length=1234 Score = 138 bits (152), Expect = 3e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 9001 GCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGATCAAA 9060 |||| |||||||||| |||| || |||| |||||| ||||| ||| |||||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 9061 GGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAA 9120 || || ||| | || | || | |||||||||| || || || || || ||| ||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 9121 CTTTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGAACACG 9180 || || || ||||| |||| |||||||| || ||| | ||||||||||||||| | Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 9181 CTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTCTTTGC 9221 ||||| ||||||||| |||||||||||||| || || || Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGC 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122702430018824