Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13929 154 1e-32 seq2468 136 3e-27 >seq13929 Length=28038 Score = 154 bits (170), Expect = 1e-32 Identities = 255/362 (70%), Gaps = 17/362 (5%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| || || ||||||||||| || |||||||| ||| |||| |||| |||| Sbjct 27611 CCAAAGATTGTGAACGGACCTGAAATCTTGAACAAATATGTCGGTGAATCTGAAGGAAAT 27552 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA---AGT 19545 | || | |||| ||||||||||||||| ||||||| || | | || || Sbjct 27551 ATCCGTAAACTTTTTGGAGACGCTGAAGAAGAATGGAAACGTTGTGG-CTCGAACTCAGC 27493 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT--- 19602 || || || || ||| | || ||| | || ||||| || ||||| | || ||| Sbjct 27492 GCTC--CATATGATTATATTTGACGAAATCGATGCAATTTGCAAGCAGCGCGGATCTATG 27435 Query 19603 ---GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 || | ||| || |||||||| ||||||||||| || || || ||| | |||||| Sbjct 27434 GCTGGATCATCTGGTGTTCATGACACCGTTGTCAATCAGCTGCTTTCCAAAATGGACGGT 27375 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA- 19718 || | || |||| |||||| | |||||||| ||||| ||||||| ||| | || || Sbjct 27374 GTAGAGCAGTTGAACAATATTCTCGTTATTGGAATGACGAATAGACGGGACATGATCGAT 27315 Query 19719 -CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATG 19777 ||||| | || || || || || ||||| || | || ||||| ||||| |||| Sbjct 27314 GAAGCGC--TGTTGCGTCCAGGCCGTATGGAAGTACAAATGGAAATCTCTTTACCTGATG 27257 Query 19778 AA 19779 || Sbjct 27256 AA 27255 >seq2468 Length=4028 Score = 136 bits (150), Expect = 3e-27 Identities = 298/441 (68%), Gaps = 9/441 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||||||||||||||| || || || || || |||||| | ||| || ||| Sbjct 3542 GTTTTGGCGTTTTTTGCTGCTTCAGATGGAATCGTAAACGAAAATCTCGTTGAGCGATTT 3483 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | || ||||| | | || ||||| | | || || | || || |||||| | ||| Sbjct 3482 ACACAGGAAGTGAAGATGCCTGAAGCGCTCTCGTTCTACAGTTTCCAGATTGCCGTCGAA 3423 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 |||||||| || ||||| |||| || | ||| | | ||| ||| Sbjct 3422 GGAATTCATTCCGAGATGTATTCAAAGATGATCGAAGCATACGTTACCGATCTAACTGAG 3363 Query 44030 AAGCATCGATTGTTTAATGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 | | | | |||||||| || || | | ||||| ||||| | ||||| ||||| Sbjct 3362 AGGAACACGCTCTTTAATGCTATTCAAGAGTTTCCCTGC-ATTAAGAAGAAAGCCGACTG 3304 Query 44089 GGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 ||| || |||||| | || |||| ||| |||||| || | |||| ||||| Sbjct 3303 GGCTCTCCGATGGATTGGAGATAAGAATGCTTCGTTTGGAATTCGCGTGATCGCTTTTGC 3244 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | |||||||| || || || || ||||||||||| ||||| |||||||| ||||| || Sbjct 3243 TGCCGTGGAAGGAATCTTTTTCTCCGGATCGTTTGCTGCCATTTTTTGGTTGAAGAAGCG 3184 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTA 44263 || | |||||||||||||| | || ||||| |||| || |||||||| | Sbjct 3183 TGGACTCATGCCTGGGTTGAC--TCACAGCAATGAACTAATTTCACGAGATGAAGGACTC 3126 Query 44264 CATTGCGATTTTGCTTGCTTG 44284 ||| | ||||| || || ||| Sbjct 3125 CATCGAGATTTCGCATGTTTG 3105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397386963383260