Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6327 168 8e-37 seq2468 96.9 4e-15 >seq6327 Length=14581 Score = 168 bits (186), Expect = 8e-37 Identities = 456/695 (66%), Gaps = 31/695 (4%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || |||| ||||||| || || | |||||| || ||||| Sbjct 7539 GTAGATGTTGGACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTGAGCTGTGGA 7480 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| ||||||||||| || | | |||||||||||| | || | || | ||| || Sbjct 7479 GGCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACGCACTCCATGCTTCGCGATTTTCTC 7420 Query 110827 CTTGAGAACATCCCAGTCGTAGTT-----------GAGCTTGGTTTC-ACCTTC------ 110868 ||| ||| | |||| | | | | || || | |||| | |||| Sbjct 7419 CTTCAGAGCTACCCAATTGCACTGATCTGTAGGAAGAACTGGCTTTCCATCTTCTGTATT 7360 Query 110869 CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGA 110928 |||||| ||| | ||||| | |||||| | ||||| || || | || ||||| | Sbjct 7359 CCACATTTCATATTGAAGAATTCCTTGGCTTACAGGAGACCCTTCGTACGTCTCATAAGT 7300 Query 110929 ACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAA 110988 ||| | ||||| |||||| || ||||| || | | || || ||||||||||| Sbjct 7299 ACCATATTTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAA 7240 Query 110989 GATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAA 111048 ||| | || | || |||| | | || | || || ||| || || Sbjct 7239 GATTCTCTTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAA 7180 Query 111049 TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCG 111108 |||| || | ||||||||| || | ||||| || | || ||| | || || || Sbjct 7179 AGCATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTT- 7121 Query 111109 CGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165 ||| || ||| ||||| ||||| | ||| || | | ||| || || || || Sbjct 7120 --CAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGAC 7063 Query 111166 AATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA 111225 || ||| || ||| ||||||| ||||| ||||||||||| | ||||| ||||| | Sbjct 7062 AACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTT---TGTCTTCTTTGACGAA 7006 Query 111226 CTTTGGA--AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 | || || || || || || |||||||||||||| ||||| | | |||| Sbjct 7005 --TCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTAC 6948 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 | | ||||| ||||| | ||||||| |||||| || || | ||| || || || | Sbjct 6947 TGCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGAC 6888 Query 111344 TTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || | ||||| ||||| ||||| |||||||| || Sbjct 6887 TTTCTATTGCAAGCATCTTTGTAAAGCATGTACGG 6853 Score = 102 bits (112), Expect = 1e-16 Identities = 244/364 (67%), Gaps = 15/364 (4%) Strand=Plus/Minus Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTC--- 111117 |||||||| || | ||||| || | || ||| | || || ||||| || || Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTC----AGCTTCGGG 6622 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 ||| ||||| |||| | |||||| | ||| || || || | || ||| || || Sbjct 6621 AACCGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAAT 6562 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA--AGG 111235 ||||||| ||||| |||||||| || | ||||| ||||| | | || || Sbjct 6561 CGCATGAAGCTTTTCGTAATCAAAGGTTT---TGTCTTCTTTGACGCA--TCGGTTCAGA 6507 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || || || || |||||||||||||| ||||| | | ||||| | ||||| Sbjct 6506 GCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCA 6447 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||||||| ||||| || || | ||| || ||||| ||| | ||||| Sbjct 6446 GTGCAGAGATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAA 6387 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||| |||||||||||||| || || || || || | || ||| | | || ||| | Sbjct 6386 GCATCTTTGTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCC 6327 Query 111416 CAAA 111419 |||| Sbjct 6326 CAAA 6323 >seq2468 Length=4028 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/424 (66%), Gaps = 18/424 (4%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATT--TGAGAAGCATAGACCTGGCATGAGAC 122728 ||||| || |||||||| ||||| |||||||| || || || || |||||||| | Sbjct 3124 TGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTCAAC--CCAGGCATGAGTC 3181 Query 122729 CCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787 | ||||||||||||||| |||| || ||| || || |||||||| ||||| || ||||| Sbjct 3182 CACGCTTCTTCAACCAAAAAATGGCAGCA-AACGATCCGGAGAAAAAGATTCCTTCCACG 3240 Query 122788 CACGCAAACGCAAAAAGGCG--TTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCA 122845 ||||| || | | ||| ||| | || || | ||| | ||| |||| | Sbjct 3241 GCAGCAAAAGCGATCACGCGAATTC--CAAACGAAGCATTCTTATCTCCAATCCATCGGA 3298 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 ||||| | || ||||||| ||| || || | ||| || || | ||| | | | Sbjct 3299 GAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCTTGAATAGCATTAAAGAGCGTGT 3358 Query 122906 TCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 122965 || | |||| | ||| ||| |||| || |||| |||||||| | ||| ||||| Sbjct 3359 TCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATCTTTGAATACATCTCGGAATGAA 3418 Query 122966 CCATTTCATT--ATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACC 123021 ||| || | |||| || | |||||| ||| ||||||| |||| || Sbjct 3419 ----TTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGGCATCTTCACT 3474 Query 123022 TCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAAT 123081 || | | ||| | | || ||| || || |||||||| || ||||||| || Sbjct 3475 TCCTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGCAGCAAAAAAC 3534 Query 123082 GCCA 123085 |||| Sbjct 3535 GCCA 3538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627920116099200