Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6327 161 1e-34 seq2527 84.2 3e-11 >seq6327 Length=14581 Score = 161 bits (178), Expect = 1e-34 Identities = 471/719 (66%), Gaps = 45/719 (6%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| |||| |||||| ||||||| | |||||||| || | |||||| ||||||||| Sbjct 7538 TAGATGTTGGACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTGAGCTGTGGAG 7479 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||| || || | ||||| |||||||| | || | | | || ||| Sbjct 7478 GCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACGCACTCCATGCTTCGCGATTTTCTCC 7419 Query 118302 TTGAGAGCGTCCCAGTCGTAGT----TG-----AGCTTTGTCTCCCC-----CTG----C 118343 || ||||| |||| | | | | || || || || || ||| | Sbjct 7418 TTCAGAGCTACCCAATTGCACTGATCTGTAGGAAGAACTGGCTTTCCATCTTCTGTATTC 7359 Query 118344 CACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGG 118403 ||||| ||| | || || || |||||| | || || || || | |||||||| | Sbjct 7358 CACATTTCATATTGAAGAATTCCTTGGCTTACAGGAGACCCTTCGTACGTCTCATAAGTA 7299 Query 118404 CCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAA 118463 || | ||| || ||||| ||| ||||| || || | || || || |||||||| Sbjct 7298 CCATATTTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAG 7239 Query 118464 ATGC-------GAGCATTCATTGCCTTG--GCCTCGTCGGAATCAAACGCGAGTCGGCA- 118513 || | ||| ||| |||| | || || |||| || | ||| Sbjct 7238 ATTCTCTTGTTGAGA--TCACGAGCTTGAGGACTAGTG-------AACG-GATACCGCAT 7189 Query 118514 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 118573 ||| || || |||| || | |||||| || |||| |||||||||||||| | | | || Sbjct 7188 CAACATGAAAGCATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTT 7129 Query 118574 AGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 || | ||| || ||||| ||||| | ||||||| | || || || Sbjct 7128 TGATGTTTCAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACG 7069 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 118693 ||||||||||| || ||| ||||||||||||||||||||||| | | ||||| || Sbjct 7068 TGTGACAACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTT---TGTCTTCTTT 7012 Query 118694 GACATACTTAGGA--AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 ||| | | || || || || || || | ||| || |||| | ||||| | Sbjct 7011 GACGAA--TCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGAC 6954 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | ||||| | |||||||| || | || |||| |||||| || || | || || ||| Sbjct 6953 GAGTACTGCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGA 6894 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 || |||||| | || || ||||| |||||||||||||| || | || || || |||| Sbjct 6893 TTCGACTTTCTATTGCAAGCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTG 6835 Score = 105 bits (116), Expect = 8e-18 Identities = 231/341 (68%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCAC 118594 ||||| || |||| |||||||||||||| | | | || || ||| | ||| || Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTC-AGCTTCGGGAAC 6619 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||||| |||| | || |||| | | || || || |||| |||||| || || | Sbjct 6618 CGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGC 6559 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG--AAGGGCG 118712 ||||||||||||||||||||| | | ||||| ||||| | | || || || Sbjct 6558 ATGAAGCTTTTCGTAATCAAA---GGTTTTGTCTTCTTTGAC--GCATCGGTTCAGAGCA 6504 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || || | ||| || |||| | ||||| | | ||||| | ||||| ||| Sbjct 6503 ATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTG 6444 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 || | || |||| ||||| || || | || || || || |||||| | || || ||| Sbjct 6443 CAGAGATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCA 6384 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 || ||||| |||||||| || || || || || |||| || Sbjct 6383 TCTTTGTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGA 6343 >seq2527 Length=10055 Score = 84.2 bits (92), Expect = 3e-11 Identities = 249/381 (65%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 130069 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 130128 || ||| ||||| || || || ||||||| ||| ||||| ||| ||| ||||||||||| Sbjct 5510 CAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAA 5451 Query 130129 GAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT 130188 ||||| || ||||| || || |||| | |||| |||| || ||| | Sbjct 5450 AAAGATTCCTTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATT 5391 Query 130189 ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| ||| | || | ||| | || || || | ||| |||| | | || || || Sbjct 5390 TTCAATCCATTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGTCGTGAATTGC 5331 Query 130249 TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATA 130308 | |||||| || | ||| |||||| || |||||| | || || | ||| ||||| Sbjct 5330 GTTGAAGAGTGTATTTTGTTCGACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATA 5271 Query 130309 TGTTTCGCCATGGA-CCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 130365 |||| || | | || || | ||| |||| | |||||||||| | || || Sbjct 5270 CATTTCAGAGTGAATTCCTTCCACT---GCAATCTGAAAATTGTAGAAAGAGAGTGCCTC 5214 Query 130366 GCTTATCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGA 130425 |||| || || | || |||| | ||| ||| ||| || |||||||| || Sbjct 5213 AGGCATCTTCACTTCTTGTGTAAAACGTCCAATGAGATTTTCATTTACGATTCCATCTGA 5154 Query 130426 CCCAGCAAAAAACGCCAGGAT 130446 | |||||||| || || || Sbjct 5153 AGCTGCAAAAAATGCAAGAAT 5133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618325025769120