Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2468 98.7 1e-15 seq2527 95.1 1e-14 >seq2468 Length=4028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || |||||||| ||||||||||||||| ||||| || ||||| ||| ||||| ||| Sbjct 3254 ATCGCTTTTGCTGCCGTGGAAGGAATCTTTTTCTCCGGATCGTTTGCTGCCATTTTTTGG 3195 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 | || |||||||| |||||||| || ||| | | ||| || || ||||| || || Sbjct 3194 TTGAAGAAGCGTGGACTCATGCCTGGGTTGACTCACAGCAATGAACTAATTTCACGAGAT 3135 Query 60108 GAGGGCCTCCATCAGGAGTTTGCA 60131 || || ||||||| || || ||| Sbjct 3134 GAAGGACTCCATCGAGATTTCGCA 3111 >seq2527 Length=10055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGA--GCATCATTTGCACAA 59981 ||| | |||||||| ||| | || || ||||| || || || ||||||| Sbjct 5355 AAAAAGAAAGCAGATTGGACAATTCAATGGATTGAAAATAAGAATGCTTCATTTGGGATG 5414 Query 59982 CGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040 ||| | | || ||||| ||| |||||||||||||| |||||||||||||| ||| || Sbjct 5415 CGTGTTGTTGCATTTGC-TGCAGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCTGCAAT 5473 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 ||| ||||| || || ||||| || |||||||| ||| | |||||| | ||||| Sbjct 5474 TTTTTGGCTGAAGAAACGTGGACTTATGCCGGGTTTGACACACAGTAACGAGTTAATTTC 5533 Query 60101 CCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 | || || || ||||||| || ||||| Sbjct 5534 AAGAGATGAAGGACTCCATCGAGATTTTGC 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548427080306880