Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12388 129 4e-25 seq13049 116 2e-21 seq10049 109 3e-19 seq7750 109 3e-19 seq8226 96.9 2e-15 >seq12388 Length=21549 Score = 129 bits (142), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 16007 AGACGGAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGG 15948 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || ||||| || || | ||||||||| || || || | ||||||| Sbjct 15947 CCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCC 15888 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| ||| | ||| ||||| | || ||||| | ||| Sbjct 15887 TTGTCCTGGAT-TTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGT 15829 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||||||| || ||||| || |||||||| |||||| Sbjct 15828 GATCGTTTTACCAGTCAACGTCTTGACAAAAATTTGCATG 15789 Score = 104 bits (114), Expect = 1e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||| ||||| || || || || || || || | |||||||| || Sbjct 15484 ATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTCAAGCTG 15425 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||| || ||||| || || | ||| ||||||||| ||| || Sbjct 15424 CTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGAT-TT 15366 Query 34623 TTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | ||| | || | || ||||| | ||| ||||||||||| | Sbjct 15365 TGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTACCAG 15306 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | | || || ||||| |||||||||||||| Sbjct 15305 TGAGGGTCTTTACAAAGATCTGCATGTTGAT 15275 >seq13049 Length=11502 Score = 116 bits (128), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| || |||||| || ||||| ||||| || Sbjct 7420 CCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAG 7361 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| || ||||| || | ||| || ||||| || || Sbjct 7360 AGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGA 7301 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| ||| ||| | || ||| | ||| ||||| | || || Sbjct 7300 ATGCCCTCTTTGTCCTGGAT-TTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGAC 7242 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||| | || ||||||||||| || | || ||||| || ||||||||||||| Sbjct 7241 TTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTTGA 7189 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| |||||||| ||||| || || || || || || Sbjct 10527 AGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGG 10468 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||||||||| ||||| || || || |||||||| || || || | |||||| Sbjct 10467 CCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCT 10408 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | ||| ||| | ||| ||||| | || ||||| | || Sbjct 10407 TTGTC-CTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGT 10349 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||||||| || | || ||||| || ||||||||| Sbjct 10348 GATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 Score = 109 bits (120), Expect = 3e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| || ||||| ||||| || || || | || || Sbjct 10071 AGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGG 10012 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| || ||||| || | ||| || ||||| || || ||| || Sbjct 10011 CCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCT 9952 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| ||| | ||| ||||| | || ||||| | || Sbjct 9951 TTGTCCTGGAT-TTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGT 9893 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||||||||||| || | || ||||| || ||||||||||||| Sbjct 9892 GATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTTGA 9849 >seq10049 Length=10599 Score = 109 bits (120), Expect = 3e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||||| || |||||| ||||| || || || || Sbjct 9171 GCCACCACGAAGACGGAGAACGAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGA 9230 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||||||||| || || ||||| || || || ||||| ||||| ||||| Sbjct 9231 AAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGCGG 9290 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTG-TGTCTTCGCTCTCCA 34657 | ||| |||||||| |||||| | || ||| | | || | || | || | Sbjct 9291 GATTCCTTCCTTGTCCTGGATCTTG-GCCTTGACGTTCTCAATGCTATCAGAGGCTTCGA 9349 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| | || || |||||||| || | || ||||| || ||||||||||||| Sbjct 9350 CTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTTGA 9403 Score = 93.3 bits (102), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 34467 TATCCAATC-GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAA 34525 |||||||| || ||||| | |||||| | || | |||||| ||| || || || | Sbjct 8378 TATCCAATTAGTTTCCGCCACGAAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGA 8437 Query 34526 TGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCT 34585 | || || || || || || || | |||||||||||||| || ||||| || || |||| Sbjct 8438 TATTGTAGTCAGACAGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCT 8497 Query 34586 GTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | ||||| ||||| | ||| ||||| ||| ||| ||| | ||| ||| Sbjct 8498 GCTGGTCTGGCGGGATTCCGTCCTTATCTTGGAT-TTTGGCTTTGACG 8544 >seq7750 Length=8304 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| ||| ||||||||||| || || || || || || Sbjct 2719 AGACGGAGAACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGG 2778 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || ||||| || || |||||||||||||| || || | ||| ||| Sbjct 2779 CCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCC 2838 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | |||||||| | || || || | ||| Sbjct 2839 TTGTCCTGGATC-TTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGT 2897 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||||| || ||||| Sbjct 2898 AATGGTCTTTCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 >seq8226 Length=1064 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | |||||| || |||||| ||||| || ||||| || Sbjct 785 GCCACCACGAAGACGGAGAACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAATCAGA 844 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||||| ||||| || || || ||||| ||||| || || Sbjct 845 AAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 904 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| || | || ||| | ||| | || | || | Sbjct 905 AATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTTTCAATGCTATCAGAGGCTTCGA 963 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || |||||||| || ||||| || ||||| || |||||| Sbjct 964 CTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGACAAAGATTTGCATG 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314674932648716