Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7750 154 1e-32 seq13049 141 8e-29 seq12388 123 2e-23 seq1186 98.7 9e-16 seq8226 96.9 3e-15 >seq7750 Length=8304 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || ||||| ||||| ||| | ||| Sbjct 1723 ATGCAGATCTTCGTTAAGACCCTCACCGGAAAGACAATCACTCTGGAAGTTGAAGCATCC 1664 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || || || ||||| || || || ||||| Sbjct 1663 GACACTATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCGCCAGATCAG 1604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || ||| | || ||| || || | |||||||||||| Sbjct 1603 CAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACACTCTCCGATTACAAC 1544 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||||| ||||||||| ||||| | || || || || Sbjct 1543 ATTCAGAAGGAGTCCACCTTGCATTTGGTTCTGCGTCTCCGTGGAGGAAT 1494 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || |||||||| || ||| ||||| Sbjct 993 ATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTCC 934 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||||||||| || || || ||||| Sbjct 933 GACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 874 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || || | |||||| || || | ||||| |||||| Sbjct 873 CAACGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTCTCCGACTACAAC 814 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | ||| | ||| | ||| | || ||||| Sbjct 813 ATTCAGAAGGAGTCGACCCTTCATCTCGTTCTTCGTCTTCGTGGTGG 767 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| | ||||| || || || ||| | || Sbjct 2936 ATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATTACCCTCGAGGTAGAAGCCTCT 2877 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| ||||| || || || || ||| Sbjct 2876 GACACAATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 2817 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | |||||| | || | ||||| |||||| Sbjct 2816 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTCTCCGACTACAAC 2757 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | ||| | ||| | ||| |||| ||||| || Sbjct 2756 ATTCAAAAAGAGTCAACTCTTCATCTTGTTCTCCGTCTGCGCGGTGGAAT 2707 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || |||||||| || ||| ||||| Sbjct 1221 ATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTCC 1162 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || || || ||||| || || || ||||| Sbjct 1161 GACACAATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 1102 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || || | ||||| | || |||| || |||||| Sbjct 1101 CAACGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACTCTTTCTGACTACAAC 1042 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| | ||| | || |||| || || || Sbjct 1041 ATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGGCTGCGTGGAGGAAT 992 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || ||| | || |||||||| || ||| | ||| Sbjct 3210 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACCATCACTCTTGAGGTCGAAGCTTCC 3151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| ||||| || || || |||||| Sbjct 3150 GACACTATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCTGATCAA 3091 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||||| || | ||||| || Sbjct 3090 CAGCGTTTGATCTTTGCCGGTAA 3068 >seq13049 Length=11502 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || ||||| ||||| ||| | || Sbjct 10309 CATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTC 10368 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| |||||| || ||||| |||||||| || || || |||||||| Sbjct 10369 AGACAGCATTGAGAACGTCAAAGCCAAGATTCAGGACAAAGAGGGAATCCCTCCCGATCA 10428 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| || || | |||||| |||||| | || || | ||| | || || ||||| Sbjct 10429 ACAGCGATTGATCTTCGCCGGAAAACAACTTGAGGATGGCCGCACCCTGTCTGACTACAA 10488 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| ||||| | || ||||| | ||| | || |||||||| Sbjct 10489 CATACAAAAGGAATCGACTCTGCACTTGGTCCTCCGTCTCCGTGGTGGCAT 10539 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || ||||| ||||| ||| | || Sbjct 9853 CATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTC 9912 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| |||||| ||||| || ||||||||||| | || || || || Sbjct 9913 AGACAGCATTGAGAACGTCAAAGCTAAAATCCAGGACAAAGAAGGAACCCCTCCAGACCA 9972 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || ||||||||| | |||||| | ||| | ||||| ||||| Sbjct 9973 GCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGACGGCCGCACCTTGTCCGACTACAA 10032 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || ||||| | || ||||| | ||| | || |||||||| Sbjct 10033 CATCCAAAAAGAATCGACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGCAT 10083 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || ||||| ||||| ||| | || Sbjct 7193 CATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTC 7252 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||| | ||||| ||||| || |||||||| ||||| || || || || Sbjct 7253 AGACAGCATTGAAAACGTCAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCAGACCA 7312 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || ||||||||| | ||||| | ||| | || |||||||| Sbjct 7313 GCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGCCGCACCCTCTCTGATTACAA 7372 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| | ||| | ||| | || ||||| || Sbjct 7373 CATCCAGAAGGAGTCAACACTCCATCTCGTTCTCCGTCTTCGTGGTGGTAT 7423 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | ||||| | ||||| ||| | || Sbjct 10081 CATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACAATTACCTTAGAAGTCGAAGCCTC 10140 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| |||||| ||||| || ||||| ||||| || || || || || Sbjct 10141 TGATAGTATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCA 10200 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || || | ||||| | ||| | || |||||||| Sbjct 10201 GCAACGTCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAA 10260 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| | ||| | ||| | || |||||||| Sbjct 10261 CATCCAGAAGGAGTCAACACTCCATCTCGTTCTCCGTCTTCGTGGTGGCAT 10311 >seq12388 Length=21549 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| || || | || || || ||||| ||| | || Sbjct 15789 CATGCAAATTTTTGTCAAGACGTTGACTGGTAAAACGATCACCCTCGAAGTCGAAGCCTC 15848 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| |||||| ||||| || ||||| || || || || |||||||| Sbjct 15849 AGACAGCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGAATCCCTCCCGATCA 15908 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | |||||| || || | ||||| | ||| | || |||||||| Sbjct 15909 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGATTACAA 15968 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 ||||| ||||| ||||| | || |||||| | ||| | || ||| Sbjct 15969 TATTCAGAAGGAATCGACTCTTCACTTGGTTCTCCGTCTCCGTGGT 16014 >seq1186 Length=9182 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 26965 ATAAATTTTTTAATTTATACGCC--ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 |||| ||||||| || | | | ||||||||||| || |||||||| || |||||| | Sbjct 3350 ATAATTTTTTTATTTCAGAAGGGTGATGCAGATATTCGTCAAAACTCTCACGGGCAAGAC 3291 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 ||||| || ||||| || |||||||| | || || | || || ||||| || || Sbjct 3290 AATTACGCTCGAAGTCGAGGCGTCCGACACCATCGAAAATGTGAAGGCCAAAATCCAGGA 3231 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 ||| || ||||| || || |||||||| ||| | || | ||| || || Sbjct 3230 CAAGGAGGGCATTCCGCCTGATCAACAACGTCTTATCTTCGCTGGTAA 3183 >seq8226 Length=1064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || |||||| | ||||| | ||||| ||| | || Sbjct 785 CATGCAAATTTTTGTCAAGACCCTTACTGGCAAGACAATTACCTTAGAAGTCGAAGCCTC 726 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||| | ||||| || ||||||||||| ||||| || || || || || Sbjct 725 AGACAGCATTGAAAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCA 666 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||| || |||||| | || ||| | ||| | ||||| ||||| Sbjct 665 GCAGCGATTGATCTTCGCTGGAAAACAACTTGAGGACGGCCGCACCTTGTCCGACTACAA 606 Query 27167 C 27167 | Sbjct 605 C 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434840919287040