Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq10737 201 4e-47 seq13649 105 3e-18 >seq10737 Length=14001 Score = 201 bits (222), Expect = 4e-47 Identities = 649/992 (65%), Gaps = 24/992 (2%) Strand=Plus/Minus Query 24021 TTGCAGGTGTGTCGCGGCTCCTGGCCACCCTTCCCATCCGGCACCAACTGGTCGCAGTAC 24080 ||||||||||||| ||||||| || || || |||||||||||| |||||| |||| | Sbjct 8868 TTGCAGGTGTGTCTCGGCTCCATCCCCCCTTTGCCATCCGGCACCGGCTGGTCACAGTGC 8809 Query 24081 TGGGAAATCCGGTACATCTCCCA----GCGATCGACCA---TCCAAGCCTTGATGCGTTT 24133 ||| ||| ||||||| ||||| || | || ||| || ||| || | || | Sbjct 8808 CGGGCAATGCGGTACAGGTCCCATTTTGCCAGCG-CCAGATTCTCAGCTTTCACCCGGGT 8750 Query 24134 ACCCACACCGAAGCGATCGTTGGTCACGATGTCGTAG-GTGTGCCAGACCGGGTTGTCGG 24192 ||| | | ||| || || ||| ||| | ||| || || | ||| |||| ||||| | Sbjct 8749 ACCAATGCTGAACCGGTCATTGATCATCAGGTCATACAGTAT-CCACGCCGGATTGTCTG 8691 Query 24193 TCCAGGCCTGTTTCATCGTGCCGTCCCAGATGCCGAGGTAGGCCCGGGTCTCCGGATCGT 24252 |||| ||| ||| | | || |||| | || |||| || |||||||| | Sbjct 8690 TCCACGCCCATTTAAAGGCCCCTGCCCACACCCCCGAATAGGTGCGACGGTCCGGATCAT 8631 Query 24253 AATTGCTCGGCACTTGGACCTTCCGCCCGCGGCAGTCGACTGTGACAGCCGGAATGTTGC 24312 |||| |||||| ||| | ||| | || | ||| ||| || |||| Sbjct 8630 AATTATCCGGCACCCGGATAATGCGCATTTTGGGTTCACAGGAGACCTGCGGGATATTGC 8571 Query 24313 TGAACTGCTCTGCGCTGAACTCGACGTACAGCAGGGCCGTGTTCGGGTAGCGCAGCTTCG 24372 |||||| | || |||| ||| ||| | ||| || | ||||| | ||| || | Sbjct 8570 GGAACTGTTTGGCATCAAACTGAACGAACAATAAGGCGGTTTCGGGGTAACTCAGTTTAG 8511 Query 24373 CGTCGATCACCTCGGTGTAGCCGGCGATCAGCATGGTGTCGGCGATGCGGTTGTTGTTCT 24432 |||| ||||||||||| | | | | | ||| | ||||| || ||||| || ||| Sbjct 8510 CGTCAATCACCTCGGTAATGGCTTCAACGACCATCGCATCGGCAATCCGGTTACTGGTCT 8451 Query 24433 GGTTCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCATTGGTGGCCGCCGGCAGGTCGA 24492 | || || ||||||||||| || ||||||||||||||| ||| || | |||| Sbjct 8450 GTTTGGGGGTCAGGCGGCGAACCCGCACCTGCCAGCCAGAATGGGCTTTGGGTAAATCGA 8391 Query 24493 TCCGGCGGGAACGCTCGTAGCGGGTGGTGGTCTTGCCATCGACGGCCTCGCG-CAGCACC 24551 ||| | || || || || |||||| ||||||||||| || ||| ||| | | | Sbjct 8390 CGCGGTGTGACCGTTCATATTTGGTGGTAGTCTTGCCATCCACAGCC-AGCGTGGGTAAC 8332 Query 24552 TCCTGATAGGCGCCGCCGTCGGTGGCCAGATCTACGGCATATTCGATCCGGTACCCGCCG 24611 |||||||| || || || || ||||||| || | ||| || || || || ||| | Sbjct 8331 TCCTGATACGCCCCCCCATCCGTGGCCACTTCAATCAGATAATCAATGCGATAGCCGACC 8272 Query 24612 ATGTTGCCGTTGGTGTCCTGCTGCTGGAGCGCTGGCCAGGCGAAGCGCAGGCGCACTGCG 24671 ||| |||| | ||| | ||| | ||||||| || || |||||||| || Sbjct 8271 GTGTCCCCGTCTTCTTTCTGTTTCTGCAATTGCGGCCAGGATAACCGAAGGCGCACCGCC 8212 Query 24672 GAAAGCTGGGTATTGCTCAGCGAGCGCACCCAGGGCGTATCGCTGCGCAACTCGACGTTG 24731 || || ||||||||| | | ||| | ||||| | | || || || | Sbjct 8211 GACAGTTGGGTATTGGTGACCGATCTGACCCATGACTCAT------TTAATTCAGTCCCG 8158 Query 24732 ACGCTGGTTTCGTTCTCAACGGCAGGGATGCCCGGGATGTAGTCCTGGTCCACCGCCCCC 24791 ||| | ||| || || ||||| || ||||| || || ||||| || | || || Sbjct 8157 ACGGTCAGTTCATTTTCCACGGCGGGCATGCCGGGAATATAGTCTTGATGGGGCGTACCG 8098 Query 24792 GCGCGCCACTCCCACTTAACGTTTGGGAAGTTCAGGTTACCGCTCGGGTCC-ATCAGCGG 24850 | ||| | |||||||| || ||||| | ||| |||||| || |||||||| Sbjct 8097 GGGCGGAATTCCCACTTCACCCCCTCAAAGTTTGCCTGACC-CTCGGGACCAATCAGCGG 8039 Query 24851 GGTGTTGTCGAGGTAGAT-GTCGCGCTCGCTCGGAACGCCGGCGAACTCGCCCTCGCCCA 24909 |||||| || || |||| | | || || || | |||| || ||||| || || |||| Sbjct 8038 GGTGTTATCCAGAAAGATATTAGTGC-CGTTCAGCCCGCCCGCAAACTCACCTTCCCCCA 7980 Query 24910 CGGCAAGCAGGATCTTGGCCATCGCGACCGAGCGCAGGCTGTCGGGTGCCTCGACCGGC- 24968 || | | ||| ||||| || | ||| ||||| || || | ||||||||| Sbjct 7979 GCGCCAATACGATTTTGGCATACGAGGTCGATTGCAGGGAATCCGGCGATTCGACCGGCG 7920 Query 24969 TGTTTCGGTTTGCTACTGCCGCCCTTGCGGCC 25000 || | | || | | |||||||||||| ||| Sbjct 7919 TGCGTGGACTTTC-ATTGCCGCCCTTGCTGCC 7889 >seq13649 Length=1481 Score = 105 bits (116), Expect = 3e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 24356 CGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAGCATGGTGTCGGC 24415 ||||||||||||||| |||||||| ||||||||| | || |||| |||||||||| Sbjct 754 CGGGTAGCGCAGCTTGGCGTCGATGACCTCGGTGATGGCGTCGATGTTGGTGGTGTCGGC 813 Query 24416 GAT-GCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCATTGG 24474 ||| || | || || ||||||||||||||| |||||| | ||||||| | || Sbjct 814 GATCACGCCACTGGTGCT-GTTCGGCGTCAGGCGAGTGACGCGAATCTGCCAGTTACTGC 872 Query 24475 TGGCCGCCGGCAGGTCGATCCGGCGGG 24501 | |||| ||||||||| | |||| ||| Sbjct 873 TCGCCGGCGGCAGGTCCACCCGGTGGG 899 Score = 86.0 bits (94), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 24164 GTCGTAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGAT 24223 ||||||| | |||| |||||||||||||||||||| || | || || ||||||| Sbjct 431 GTCGTAGAAGATCCAGGCCGGGTTGTCGGTCCAGGCCGTCTTGAACGAACCATCCCAGAC 490 Query 24224 GCCGAGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCAC 24265 |||| ||| |||| | ||||| ||||||||||||||||| Sbjct 491 GCCGGAGTACTGCCGGCTTTCCGGGTCGTAATTGCTCGGCAC 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194786228311544