Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq9638 111 4e-20 seq10737 109 1e-19 >seq9638 Length=4675 Score = 111 bits (122), Expect = 4e-20 Identities = 133/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 |||||| || ||| | |||||| ||||||| || | || || |||||||| || | Sbjct 2064 TAGCCCACCGTCGGTATCCATTCAGTCTTCAGGCTGCGAAATAACCGCTCCATCGGCGCG 2005 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 || || |||||| || ||||||||||| |||||| ||| ||||||||||| ||| | Sbjct 2004 TTGTCGTGGCAGTTGCCGCGCCGACTCATGCTCTGCGTGAAGCGGTATCTCCATAGTCTC 1945 Query 39661 TGCCGG-AACT--GCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC 39713 || ||| |||| | |||| ||||| || ||||| || |||||||| |||| ||| Sbjct 1944 TGGCGGAAACTTCGGCTGC-CGTAT--TGGCTGCCCTGGTCGCTGTGAAACAGCAC 1892 Score = 111 bits (122), Expect = 4e-20 Identities = 133/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 |||||| || ||| | |||||| ||||||| || | || || |||||||| || | Sbjct 2064 TAGCCCACCGTCGGTATCCATTCAGTCTTCAGGCTGCGAAATAACCGCTCCATCGGCGCG 2005 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 || || |||||| || ||||||||||| |||||| ||| ||||||||||| ||| | Sbjct 2004 TTGTCGTGGCAGTTGCCGCGCCGACTCATGCTCTGCGTGAAGCGGTATCTCCATAGTCTC 1945 Query 17036 TGCCGG-AACT--GCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC 17088 || ||| |||| | |||| ||||| || ||||| || |||||||| |||| ||| Sbjct 1944 TGGCGGAAACTTCGGCTGC-CGTAT--TGGCTGCCCTGGTCGCTGTGAAACAGCAC 1892 >seq10737 Length=14001 Score = 109 bits (120), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 15431 TATCCGGAACTGAAGGAGATCCTGCTCGCATACGAATGTTTATTTGTTCGACAGGGGAAA 15490 |||||| | || || || || | | ||||| | |||| ||||| |||| || ||| Sbjct 2213 TATCCGCAGCTAAAAGAAATTTTATTGGCATATGGCTGTTACTTTGTAAGACAAGGAAAA 2272 Query 15491 GGTAGCCATGAGATATGGCGAAGTCCTATCACGAACAAAGCATTCAGTGTTCCATTTACA 15550 || |||||||| |||||||| || ||||| | |||||||||||| || |||| |||| Sbjct 2273 GGCAGCCATGAAATATGGCGTAGCGACATCACCAGCAAAGCATTCAGCGTGCCATATACA 2332 Query 15551 ATAGTTTCAAGGCATACGGCTAACGCAATTCTTCGCCAAGCAGG-AATAAACAAGAAAAT 15609 ||||| || | ||||| || || ||||| || | || || || | |||| ||| |||| Sbjct 2333 ATAGTCTCTAAACATACCGCCAATGCAATACTGAGACAGGCGGGTATTAAAGAAG-AAAT 2391 Query 15610 TTAA 15613 |||| Sbjct 2392 TTAA 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132137632911200