Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq10339 300 6e-77 >seq10339 Length=11660 Score = 300 bits (332), Expect = 6e-77 Identities = 1561/2450 (64%), Gaps = 153/2450 (6%) Strand=Plus/Plus Query 41261 AGGTTGACCCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAGCGCGATCTGGTGCGTT 41320 |||| |||| || ||| | || || || || |||||||||| || | |||| | Sbjct 5053 AGGTCGACCAGGCCGACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCT 5112 Query 41321 GGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACCGTG 41379 |||| || ||| ||| | ||| ||| | ||| ||| |||||||||||||||||| | Sbjct 5113 GGGCCATCCGCCTGGGCTGCGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTC 5171 Query 41380 ATGCAGCTGGAGATCGTGCGCCTGTCGCTAGCCAAGCATGGCGGTGGTAAAGGTCTGATC 41439 ||||| |||||||||||||| | || ||| |||| ||| || | || |||||| Sbjct 5172 GTGCAGTTGGAGATCGTGCGCATCGTGCGTGCCC-GCAT--CGGCGGCATGGGCCTGATC 5228 Query 41440 GTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGAA 41499 || || |||||||||||||| |||||| || |||||| | || |||||| Sbjct 5229 GTCATCCCGCTGGGCGTGCGTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCACG 5288 Query 41500 ACCCGGTTCGTTCGCCGTACAGACGAAGTCGGCGGCG---ACGGAATCTATCTCACCAAC 41556 | |||| | ||||| | || |||| || || | |||| ||||| ||||||||| Sbjct 5289 GTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAAC 5348 Query 41557 TATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGAT 41616 || || | |||||||| | ||| |||||||| ||||||| | | | || || Sbjct 5349 TACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGAC 5408 Query 41617 GAGGCGAGCGTGC-TGCGGTCTTTCGG-GTC--CAAGACCTACCAGTCGTTCCTAGAGCT 41672 |||||| || ||| |||| ||||| | | |||||||| || |||| | | ||| Sbjct 5409 GAGGCG-GCATGCCTGCGCGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGCT 5467 Query 41673 GTTCGACG-------------------------------------CG-----GTGCCGTA 41690 ||||| || || |||||||| Sbjct 5468 GTTCGCCGGCGACGACCGGCGCGACATGGCCAACCGCGTGAAGAGCGCTGGCGTGCCGTA 5527 Query 41691 CCGGTACGTCGCCACCGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATCCACTACGC 41750 || | ||| ||||| |||||||| || ||| || |||||| | |||| Sbjct 5528 TCGCTTCGTGGCCACGGCCACGCCCAGTCCAAACGAGTTTGTCGAGCTGCTGGCCTACAG 5587 Query 41751 GGGCTATCTCGGGGTGATGGACACCGGGGCGGCGCTCACGCGTTGGTTCCAACGGGACT- 41809 | || || || ||||||||| || ||| ||||||| ||| | || || Sbjct 5588 CGCCTTCCTGGGCGTGATGGACGTTGGCCAGGCCAAGACGCGTTTCTTCAAGCGCAACAG 5647 Query 41810 CGACGAAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGC 41869 ||| |||||| ||||||| || || ||| || | ||| |||||||||||| Sbjct 5648 CGA-GAAGGCCGACAACCTGACGCTGAGCCCAGCGCGCGAGCGCGACTTCTGGCTGTGGG 5706 Query 41870 TGAACACGTGGGCGGCGTTCGTGCAATCACCGGCCGACCTCGGTCACGACGCCACCGGCT 41929 || | ||||| ||||||||| || | |||||||| || || | ||||| Sbjct 5707 TGGCAAGCTGGGCCCTGTTCGTGCAGAAGCCCTCGGACCTCGGCTACAGCGACGACGGCT 5766 Query 41930 ATGACCTTCCGCCGCTGGAGGTGCTGTGGCATGAGGTTGATCCGCCGGCTGACGACTTCG 41989 | || || ||||| | || | | ||||| ||| |||| |||| ||| || || Sbjct 5767 ACGAGCTGCCGCCCATCGACATCCGCTGGCACGAG----ATCC--CGGCGGACCACGCCG 5820 Query 41990 AT-----TTCGAGCGTG-ACGGGCAGGGCCAGTTGGT---GCGCGGGGTGAACCTCGGCC 42040 | | | | || |||| |||| ||| || | |||| || | ||||| Sbjct 5821 ACGCTGGTACCAATATGGACGGCCAGGCGCAGATGTTCAAGCGCCAGGCCA---TCGGCG 5877 Query 42041 TGCCGCAGGCTGCGGCCGAAAAGCGCCGGTCGCTGGATGCTCGGCTGTCCAAGCTGACCG 42100 || | | || ||| ||| |||||| |||||||| || || ||||| ||| | Sbjct 5878 TGGTGGACGCGGCGCGCGAGAAGCGCGACAGCCTGGATGCGCGCGTGGCCAAGATGATGG 5937 Query 42101 AGATCGTCACCGACCACGCCGAACACGGCGAGGGCCAGATCGTGATCTGGTGCGACCTCA 42160 || | | |||| | || |||| | ||| ||||||||| |||||| Sbjct 5938 AGCTGCGCGCCGA-------GGACCCGGCC--GCCCACCGTGTGATCTGGCACGACCTGG 5988 Query 42161 ACGACGAGCAGCGCGCCATCGAGAAGGCCCTC--GAAGATGCCGGGTTGAGCTTCTCATC 42218 | || |||| |||||||||||| ||| || || | |||| ||| ||| Sbjct 5989 AGGATGAGCGCCGCGCCATCGAGCGCGCCATCCCGACG--GCCGCC---AGCGTCT---- 6039 Query 42219 GGTGTACGGGTCACTCGACCCGGA---CGAGGTGGAGCGCCGCCTGGCCGACTGGAAGAA 42275 |||| | | |||||||| |||| |||| || ||| | || | | Sbjct 6040 -----ACGGCACCCAGGACCCGGAGACCGAGCGCGAGCCCCTGGTGGTGGCCTTCAGCGA 6094 Query 42276 CCGCGACACCTACGCGCTGATCGGCAAACCAGTGATGCTCGGGCAGGGCATG-AACCTGC 42334 || | | | | ||||| | |||| || ||| |||| |||||| | || ||||||| Sbjct 6095 TGGCCTGATCCAGGAGCTGAGCAGCAAGCCCGTGCTGCT-GGGCAGCGGCTGCAACCTGC 6153 Query 42335 AGCAGGCCCACACCTGTGTG---TACATCGGCATCACGCACAAGTTCAACGATCTGATCC 42391 ||| | | | |||| | | ||| | |||||| ||||||| ||| | |||| Sbjct 6154 AGCGGCACTGCGCCTGGGCGATCTACCTGGGCATCGGCTTCAAGTTCGCCGACTTCATCC 6213 Query 42392 AGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACCCATCCC-TGCACAGCCCATTTGATC 42450 || ||||||| | ||||| ||| || || | | ||| || | | ||||| Sbjct 6214 AGTCGGTGCACCGCCTCCAGCGCTTCCTGCAGACGCGCCAGGTGCGCATCG-ACCTGATC 6272 Query 42451 CACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCATC---CGCGAGAAATGGGCACAACAC 42507 || |||| ||||||| || ||| ||| | | ||| |||||||| || ||| Sbjct 6273 TACACCGAGGCCGAGCGCGAGGTGCGCCGGACCCTGGAACGC---AAATGGGCCCAGCAC 6329 Query 42508 CGAGAGT---TGACATCAACG-ATGACCGACATCATTCATGAGTACGGACTTGACCC-CG 42562 ||| || || || ||||| || ||||| | || | ||| ||| | | || Sbjct 6330 AAGGAGCAAGTGGCA----CGCATGACGGAAATCATCAAGGAATTCGGG-TTGTCGCACG 6384 Query 42563 AAGCGATCTCCGAGGCGCTGCAACGCTCCATCGG-GTGCGAGCGCATCGAAG------CA 42615 || || | || ||||| ||| |||| || ||| |||||| |||| | | Sbjct 6385 CGGCCATGATCCAGACGCTGAGCCGCGCCATGGGCGTG-GAGCGCGTCGAGGTGCGCGCG 6443 Query 42616 TCCGGCGAGGGGTGGGTGTTCGTCAACAACGACTGCGTACTCGAAACCGAGAGAATGGCA 42675 | |||| | || ||| | ||||||||||||||||| ||| || | ||||| Sbjct 6444 CCGGGCGGCGAGTACGTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCC 6503 Query 42676 GACGATTCGGTGGATCTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAGTACACG 42735 ||| |||| ||| | | ||||| || || ||| || || ||||||||| || Sbjct 6504 AGCGACAGCGTGGGCCTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCG 6563 Query 42736 CCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGAC 42795 || | || | ||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct 6564 CCCAACTTCGCCGACTTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGAC 6623 Query 42796 TACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTC 42855 | ||| ||| ||||||||||| | || ||| || || | |||| ||||||| Sbjct 6624 TTCCTGGTGCCGGAGCTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTC 6683 Query 42856 AAGGACCGCATCTTG---TTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCG 42912 ||| |||||||| || ||||| || |||| |||| | | |||| || ||| Sbjct 6684 AAGAACCGCATCGTGCCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCC 6743 Query 42913 TTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATC 42972 ||| ||| || | ||| | | |||| ||||||| ||| | | ||| | Sbjct 6744 TTCGACGTGGACACCATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAG 6803 Query 42973 ACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAG 43032 ||| |||| ||||| |||||||| || ||||||||||| ||||| ||||||| ||| Sbjct 6804 ACCATCGTCACCGACGTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAG 6863 Query 43033 CAGTGCAAAGACGCCACCAAGATGGGGGTCGGCTCCCCGGAATACGTTCTGCTGTTCCAT 43092 || ||||| || | | | ||||| ||||| || ||| | ||| | |||| Sbjct 6864 CAATGCAAGGATGGCTCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGC 6923 Query 43093 AAACCGCAGACAGACAGGTCGAAG-GGATACGCCGACACACCCGTCGCCAAATCCAAGGA 43151 || | | ||| ||| | | | || || |||||| ||||| | || ||| Sbjct 6924 AAGGCACCGACCGAC-GCCAGCCGCGGCTATGCCGACGTGCCCGTGGTGAAGGACAAAAC 6982 Query 43152 CGACTACACCCGGGCACGTTGGCAGGTGGACGCGCACGCGTTCTGGCG-ATCGAGCGGAA 43210 ||| ||| | ||| | || |||||| | ||||| |||| | | ||| | | || || Sbjct 6983 CGAGTACTCGCGGCCGCGCTGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAG-GGCG 7041 Query 43211 ACAGGTCACTGACAGTCGACGAGCTTGCCGCGCTGCCACCAGACCAGTTGGCCTCA--CT 43268 || || ||||| || ||||| | | || |||| | | | ||| || Sbjct 7042 ACCGGCTGCTGACGCCAGAGGAGCTGGAAGGCCT--CACCCATGCCGACATCTTCAAGCT 7099 Query 43269 GTTCACCAAGCACAGCCTGAAGGACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTG 43327 |||| ||||||| ||| || ||||||||||| | || ||| |||| |||||||| | Sbjct 7100 GTTCCGCAAGCACTCGCTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGCG 7158 Query 43328 AGCAACTCGAAGGTCGCGGTGCCCTGCCTGCTACGTTCATG--GCCATCGCCCCGGGATC 43385 || || | | ||||| ||||| | || |||||| || ||| | || | Sbjct 7159 AGGCGCTGGCCGAGCGCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGC-AGAGC 7217 Query 43386 GTGGTCACCTCACGTGTGGCACGACGTGAACCGGATGATCACCTTGAACGGGGAGCAGAA 43445 ||| || |||| ||| |||||||| || ||| ||| | ||| | | |||| Sbjct 7218 -TGGCATCCGGACGTCTGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAG-T 7275 Query 43446 ACGCCGCAACG-TCCAAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGA 43504 || || | | | ||||| ||||||| ||||||||||||| | |||||| || Sbjct 7276 CGGCAGCCGGGCGCGAGATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGA 7335 Query 43505 TCACTCGCTTCTCGAATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCG 43564 |||| | | ||| | |||||| ||| | |||||| |||||||| ||| || | Sbjct 7336 TCACCCAGTACTCCATGAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACGG 7395 Query 43565 TGCCGTTGCGGGCTCTGAAACTTGGTCGGCGCGGCCGTGGTGTCGAGCTG 43614 |||| | |||||| || || || ||||||||||| || ||||||| Sbjct 7396 TGCCCTACCGGGCTGTGCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177822699747496