Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq10339 194 6e-45 >seq10339 Length=11660 Score = 194 bits (214), Expect = 6e-45 Identities = 306/438 (70%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 45560 GTGTTCGCCAACAACGACTGCGTTCACGAAACCAAGAGCATGGCAGACGATTCGGTGGAT 45619 ||| | | ||||||||||||||| |||| || ||||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 45620 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 45679 ||| | | |||||||| || ||| || || ||||||||| |||| | || | |||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 45680 TTCGGCCACACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 45739 ||||||||||||||| ||||| |||||||| ||||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 45740 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 45799 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 45800 ---TTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGCCGAGGCG 45856 ||| | || |||| |||| | | || | || ||| ||| ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 45857 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTCACCGAT 45916 ||| | | ||| ||||||| ||| | | ||| | ||| |||||||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 45917 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCC 45976 ||||| || || ||||||||||| ||||| ||||||| |||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 45977 ACCAAGATGGGCGTCGGC 45994 | |||||| ||||| Sbjct 6879 TCGCGCATGGGCTTCGGC 6896 Score = 116 bits (128), Expect = 1e-21 Identities = 227/325 (70%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 44211 ACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGGGCGGTC-GCCGGGGGGCGG 44269 ||||| ||||| |||||||||| | |||| ||||| || ||| ||| | | Sbjct 5074 ACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTGGG--CTG 5131 Query 44270 CG-GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCG 44328 || |||| | ||| ||| ||||| |||||||||| | ||||||||||||| || || Sbjct 5132 CGCGGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGATCGTGCG 5191 Query 44329 CCT-GTCCCTGGCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGC 44387 | | || | || | ||| |||||| | || |||||||| || |||||||| |||| Sbjct 5192 CATCGTGCGTGCCC--GCAT--CGGCGGCATGGGCCTGATCGTCATCCCGCTGGGCGTGC 5247 Query 44388 GGATCGAGTTCGCCCACGACGCCAACATGC-TGGGCATTGAAACCCGGTTCGTTCGCCGC 44446 | |||||| || |||||| || || | ||||| | |||| | |||||| Sbjct 5248 GTCAGGAGTTCATCCGCGACGCGG-CACGCCTTGGCATCACGGTCAAGTTCATCCGCCGC 5306 Query 44447 ACAGAAGAAGTCGGCGGCG---ACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGAC 44503 | || |||| || || | |||| ||||| ||||||||||| || | |||||||| Sbjct 5307 ATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATCCGCGAC 5366 Query 44504 GGAAAGTTGGACCCGACACTGTTCA 44528 | ||| |||||||| ||||||| Sbjct 5367 CGCAAGCTGGACCCGCTGCTGTTCA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190732514488336