Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq4764 800 0.0 >seq4764 Length=15780 Score = 800 bits (886), Expect = 0.0 Identities = 1050/1439 (73%), Gaps = 13/1439 (1%) Strand=Plus/Plus Query 23867 ATGAAACCCGAGCACCTTGCGAAGCTCCGGGACAAGCTGTGGCGCCTGAACAACCTGTAT 23926 ||||| || || ||||| || || || || ||||| ||| | ||||| || || ||| Sbjct 1941 ATGAAGCCGGAACACCTCGCATTACTGCGCGATAAGCTCTGGAGGCTGAATAATCTCTAT 2000 Query 23927 TTCATCACCGACAAGGCAGGCAAGAAGACTCGCTTCCGCATGACAGCGGAGCAGTTGGAG 23986 | || || || || | ||| |||| | || || |||||| |||| ||||| ||| Sbjct 2001 TGGATTACGGATAAAGAAGGGAAGACTATCCGGTTTAAGATGACACCGGAACAGTTAGAG 2060 Query 23987 TATTTCGAAGGCCTGCACACTCGGAACATCATCCTGAAGGCACGCCAGCTCGGCTTTACG 24046 ||||| ||||| ||||||| || || ||||| ||||| ||||| ||||| || || ||| Sbjct 2061 TATTTTGAAGGAATGCACACCCGCAATATCATTCTGAAAGCACGACAGCTTGGTTTCACG 2120 Query 24047 ACTGAGCAGTGCATCATTCAACTGGACGCGGCGCTGTTCGAGTCGGCCAAGTGCGCGCTG 24106 |||||| |||||| ||||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 2121 ACTGAGGTGTGCATTATTCAGCTTGACGCAGCGCTATTTGAGTCAGCTAAGTGCGCCCTG 2180 Query 24107 ATTGCTCACACCCTGAATGATGCCAAGCGCCTGTTCCGGGAGAAGATCAAGTTCGCGTAC 24166 || || ||||| | || ||||| |||||||||||||| |||||| |||| | || ||| Sbjct 2181 ATAGCCCACACGTTAAACGATGCTAAGCGCCTGTTCCGTGAGAAGGTCAAATATGCCTAC 2240 Query 24167 GACAATCTGCCGGCAGAGATCAAGGCGGCCAACCCGGCGCGCAACGACGCAGCCGGTGAG 24226 ||| | |||| ||||| ||||| |||||||| || | ||||| ||| | || ||| Sbjct 2241 GACCGATTACCGGATGAGATTAAGGCCGCCAACCCTGCTAGTAACGATGCATCTGGGGAG 2300 Query 24227 CTGGTATTCGCCAAGGGCGGCTCGCTGTATGTCAGCACGTCATTTCGTGGCGGCACGCTG 24286 || || || ||||||||| || |||||||| || || |||||||| ||||||||| Sbjct 2301 CTAGTCTTTCGCAAGGGCGGTTCACTGTATGTATCAACCTCGTTTCGTGGTGGCACGCTG 2360 Query 24287 CGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGC 24346 || || ||||| || || |||||||| || || || |||||||| || |||| || | Sbjct 2361 CGCTATCTGCATGTGTCGGAGTTCGGGAAAATTTGTGCCAAGTTCCCCGACAAAGCCAGA 2420 Query 24347 GAGATCGTCACTGGTGCGTTTGAGGCGGTGGCTACTGACTGCTTCGTCACCATCGAATCG 24406 || || ||||| || || ||||| ||||| | || ||||| ||| ||| || ||| Sbjct 2421 GAAATTGTCACCGGGGCATTTGAAGCGGTATCAACGGACTGTTTCACCACGATTGAAAGT 2480 Query 24407 ACGGCAGAGGGGCGGGCAGGGTACTTCTTCGATTACTCGCAGGCCGCTGAGAAGCAACAG 24466 || ||||| ||||| || || |||||||| ||||||| ||| | || ||||| ||| Sbjct 2481 ACAGCAGAAGGGCGAGCGGGATACTTCTTTGATTACTGTCAGACGGCAGAGAAAGCGCAG 2540 Query 24467 GCCGCAAAGCAGCCGCTCGGC-AAGCTGGACTGGAAGTTCTTCTTCTTCAGCTGGTGGAA 24525 ||| | | | | | || || ||||||||||| ||||| ||| |||||||| Sbjct 2541 AT-GCAGGGTAAGCAATTATCTAACCTCGACTGGAAGTTTTTCTTTTTCTCGTGGTGGAA 2599 Query 24526 GAATGCCGAGTACTGGC-TGGACCCGGCCGGAACGCTCCTGCCGCAGCGCCTGACAGATT 24584 |||| | || || | | ||||||| ||||| | ||||||||||| |||| Sbjct 2600 GAATCCGCTCTA-TGCCATTGACCCGGT-GGAACCAA--TACCGCAGCGCCTACGTGATT 2655 Query 24585 ATTTCGCCGAGCTTGAGGCAAAGCACGGCATCAAGACTAAC-GAAGGTCAGCGCGCCTGG 24643 ||||||| ||||| | | |||||||| ||| | ||| || ||| |||| || ||| Sbjct 2656 ATTTCGCAGAGCTGCAAGGTAAGCACGGTATC-ACACTGACTGAACGTCAAAAGGCTTGG 2714 Query 24644 TACGCCGCCAAGGAAAAGACCCTCGGCGACGACATGAAGCGGGAATACCCGTCGATCCCT 24703 || |||||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 2715 TATTTCGCCAAAGAAAAGACGCTCGGCGATGACATGAAGCGGGAATACCCGTCGATCCCC 2774 Query 24704 GCCGAGGCATTCCAGCAGAGCA-TCGAGGGCGCCTACTACGCCAAGCAATTCGCCAAGCT 24762 | |||||||||||||| | || | || ||||| |||||||||||||||||| | ||| Sbjct 2775 TCTGAGGCATTCCAGCA-ATCAGTAGAAGGCGCTTACTACGCCAAGCAATTCCGCTGGCT 2833 Query 24763 GTACGCACAGCAGCGAATCGGCGTGCTGCCAGATAACAGTCACCAGCCGGTGCACACCTT 24822 ||| | | | | || || ||| | || |||||| || | ||| || || ||||| Sbjct 2834 GTATGAAAACAAACGCATTGGCAAATTACCGGATAACTCACATCTGCCCGTTCATACCTT 2893 Query 24823 CTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGTTCGTTCGGATCGTTGGCGATGA 24882 |||||| || || ||||| || |||||| | ||||||||||| || || || || || Sbjct 2894 CTGGGATATTGGGGTGGGTGATTCAACGTCTATCTGGTTCGTGCGTGAAGTCGGAGAAGA 2953 Query 24883 GTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAGGCCTGCGGCACTACATGAAGGT 24942 ||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 2954 GTTCCACATCATCGACTACTACGAGAACTCTGGCGAAGGCTTGCGGCACTACATGAAGGT 3013 Query 24943 GCTTAAGGAGCGCGGCTACACGTACGGCGACCACTGGGGGCCGCACGACATCGACAACCG 25002 | | ||||| ||||| | ||||| || || |||||||| || || ||||| ||||| Sbjct 3014 GTTGAAGGACAAAGGCTATATCTACGGTGATCATTGGGGGCCACATGATATCGATAACCG 3073 Query 25003 CGAGTTCGGTAGCGACGGCAAGACCCGCCGCGAGATCGCAAAGGAAGGCTACGAGTTCGA 25062 ||||| || || | ||| | || || || | || ||||| ||||| |||| Sbjct 3074 TGAGTTTGGATCTGATGCTAAGTCTCGACGAGAACTGGCGCGTGAAGGGTACGAAATCGA 3133 Query 25063 CGGCCAGCGCTACAGCATCCGCTTCCAGGTGGTGCCGAAGCTGGGCGTAGACGATGGCAT 25122 ||| ||| ||| || ||| |||| ||||| ||| | || || || |||||| Sbjct 3134 CGGTCAGAAATACTCAATGATATTCAAGGTTGTGCCAAAGGTTGGTGTGGATACTGGCAT 3193 Query 25123 TGATCACGTACGCGAGATCCTTCCCCGCTGCGCCTTCGATGACTCGAAGTG-TGAGACGG 25181 || || || || ||||| || |||| || ||||| ||| || | || || Sbjct 3194 AGAATCGGTGCGTGAAATCCTGTCCAATTGCGTATTTGATGAAGAGAAATGCAGTGA-GG 3252 Query 25182 GCATTGCCTGCCTCGAAAACTACCGCAAGGAATGGGACGACAAGCGCGGCTGCTGGAAAG 25241 | || | || |||| |||||| || |||||||| ||||||||||| |||||||||| Sbjct 3253 GGATATCTCATCTGGAAAGCTACCGTAAAGAATGGGATGACAAGCGCGGTTGCTGGAAAG 3312 Query 25242 ACAAGCCGCTTCACGACTGGTCGTCTCACGGCTCCGACGCATTCCGCTATTTCGCTGTG 25300 | ||||| ||||| |||| | || || || | || | ||||| ||||| || ||| Sbjct 3313 ATAAGCCACTTCATGACTTCACATCACATGGTGCTGATGGCTTCCGTTATTTTGCGGTG 3371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155583264242272