Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq2795 140 1e-28 seq10737 95.1 5e-15 >seq2795 Length=11366 Score = 140 bits (154), Expect = 1e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 8725 TCCATCTGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGA 8784 ||||| ||||||| |||||||||||||| || | ||||||||||| ||||| || | Sbjct 11222 TCCATTAGGTATCAGTGGTTCCATGCTATCCCCTCTCGCCGGAAAACACAGCACTCCGGT 11163 Query 8785 ACCATCACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACC 8844 |||||| |||| ||||| || | | || || ||||| || || | || ||||| || Sbjct 11162 GCCATCAGTGTTGGCTCCTACTCTCCTAAAAGTGGCTTTGGAAAATCTCAACTTAAAGCC 11103 Query 8845 ATTATGATCTTCG-CAATGAACTCTTCCGTCACCGCATGCAAACTCAATGTCTTTCAGAT 8903 || | || || ||||| ||| | || ||| || |||||||| || ||||||| | Sbjct 11102 GTTGTAGTCCACGTCAATGCACT-TACCACTACCACAAGCAAACTCTATATCTTTCAAAA 11044 Query 8904 ATGGCACCTCAACTTCATCATCTCGTAGTGGTGTATTTCTGTCCCA 8949 |||| ||||| |||||||||||| || ||||| || || ||||| Sbjct 11043 ATGGAACCTCTACTTCATCATCTTCTAAAGGTGTTTTGCTATCCCA 10998 Score = 122 bits (134), Expect = 3e-23 Identities = 203/287 (71%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 18398 ATGGCAAACCTACGCAAAGAAGCGCGTGGCAGAGAATGTCAGGTACGGATTTACGGCGTA 18457 |||||||| ||||||||||||||||| || ||||||||||||| | || ||| | Sbjct 3918 ATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCATC 3859 Query 18458 TGCAATGGCAATCCTGAAACTACAGTTTTGGCGCATTACCGAATAGCTGGAATTTGCGGA 18517 || || || || ||||| |||| |||| |||||||| || ||||| ||||| || Sbjct 3858 TGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGGC 3799 Query 18518 ACGGGAATGAAGCCAGATGACCTGTTGGCTGCATGGGCCTG-TAGTGACTGCCATAATGA 18576 | ||| ||||| || |||| ||||| | |||||||| || | ||| || || |||| Sbjct 3798 ATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTTCGTG-TTGTCACGATGA 3740 Query 18577 AATCGATCGCCGTACTCGCATTCTCGACA-ACAACGAC--TCCAGACTTTAC-CACCTGG 18632 ||| || ||| | || | | |||| | | |||| | || || | | ||| | | Sbjct 3739 AATAGACCGCAGAACGAGGCT----GACAGAGACCGACTATGCACACATGGCTCACTTAG 3684 Query 18633 AAGGCGTGATCAGGACGCAGGCGATACTGCTGAAGGAGGGGAAAATT 18679 | || || ||||||||||| | ||| |||| |||||| || ||| Sbjct 3683 AGGGTGTAATCAGGACGCAATCAATATTGCTATCGGAGGGTAAGATT 3637 >seq10737 Length=14001 Score = 95.1 bits (104), Expect = 5e-15 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 17239 GAATTTAAGCACAGCATGTCTTTAAG-ACCTTCTGTGAAAATCGCCCGTAACGTTCGCTC 17297 ||||||||||||| | || ||| | ||| ||| ||||| || | || || ||| Sbjct 4626 GAATTTAAGCACAAGGTTACTCAAAGTAACTT-TGTTAAAATTGCTCAAAATGTGCGCCA 4684 Query 17298 CCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 17357 | | | | | |||||||| |||||||||||||| ||||| || ||| | || ||||| | Sbjct 4685 CTTAACCTTATGGACAGAGCGCGGAGCAGCCCGCCACGCTAAGATGTTGGATACTGACAA 4744 Query 17358 GGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCAGCCAG 17403 |||||||| || ||||| || |||| || | ||||||| |||| Sbjct 4745 AGCATGGGATGTCTTCGAGAAGTTGGAGGATTTTTATTTCAACCAG 4790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194645452140888