Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13049 140 2e-28 seq7750 134 9e-27 seq10049 104 2e-17 seq12388 96.9 2e-15 seq8226 82.4 5e-11 >seq13049 Length=11502 Score = 140 bits (154), Expect = 2e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || |||||||||||||||||||| || || Sbjct 9851 AACATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCC 9910 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||| |||| | | ||| ||||| ||||||||||| || ||||| Sbjct 9911 TCAGACAGCATTGAGAACGTCAAAGCTAAAATCCAGGACAAAGAAGGAACCCCTCCAGAC 9970 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||| | || ||||| ||||||||||| ||||||| ||||| || ||| ||| Sbjct 9971 CAGCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGACGGCCGCACCTTGTCCGACTAC 10030 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| |||||||| || || Sbjct 10031 AACATCCAAAAAGAATCGAC 10050 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || |||||||||||||||||||| || || Sbjct 7191 AACATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCC 7250 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||| |||||| | || ||||| |||||||| || | || ||||| Sbjct 7251 TCAGACAGCATTGAAAACGTCAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCAGAC 7310 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||| | || ||||| ||||||||||| ||||| | ||||| | |||||| Sbjct 7311 CAGCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGCCGCACCCTCTCTGATTAC 7370 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || || ||||| ||| | ||| | ||| Sbjct 7371 AACATCCAGAAGGAGTCAACACTCCATCTCGTT 7403 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || |||||||||||||||||||| || || | Sbjct 10310 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTCA 10369 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | | ||| || ||| |||||||| || | || || |||||| Sbjct 10370 GACAGCATTGAGAACGTCAAAGCCAAGATTCAGGACAAAGAGGGAATCCCTCCCGATCAA 10429 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| |||||||| || || | ||||| | || |||||| Sbjct 10430 CAGCGATTGATCTTCGCCGGAAAACAACTTGAGGATGGCCGCACCCTGTCTGACTACAAC 10489 Query 23791 ATACAAAAAGAGTCCAC 23807 |||||||| || || || Sbjct 10490 ATACAAAAGGAATCGAC 10506 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || || || | ||||| || || | Sbjct 10082 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACAATTACCTTAGAAGTCGAAGCCTCT 10141 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | | |||| | | ||| ||||| ||||| ||||| | || ||||| || Sbjct 10142 GATAGTATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAG 10201 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || || || ||||| | ||||| | ||||||||| Sbjct 10202 CAACGTCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAAC 10261 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| ||| | ||| | ||| Sbjct 10262 ATCCAGAAGGAGTCAACACTCCATCTCGTT 10291 >seq7750 Length=8304 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| |||||||| ||||| || |||||||| |||||||| | | Sbjct 1724 AATGCAGATCTTCGTTAAGACCCTCACCGGAAAGACAATCACTCTGGAAGTTGAAGCATC 1665 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || || || || ||||| | ||||||||||| Sbjct 1664 CGACACTATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCGCCAGATCA 1605 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || ||||| || |||| || || | ||||||||| Sbjct 1604 GCAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACACTCTCCGATTACAA 1545 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| || ||||| ||| | | | || |||||| Sbjct 1544 CATTCAGAAGGAGTCCACCTTGCATTTGGTTCTGCGTCTCCGTGGAGGA 1496 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || ||||| |||||||| |||||||| || || || | | Sbjct 994 AATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTC 935 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || || ||||||||||| | || |||||||| Sbjct 934 CGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 875 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || ||||| || || || ||||||| || ||| | ||| ||||| Sbjct 874 GCAACGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTCTCCGACTACAA 815 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | ||| | ||| Sbjct 814 CATTCAGAAGGAGTCGACCCTTCATCTCGTT 784 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || ||||| || || || ||||| || || || | Sbjct 2936 ATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATTACCCTCGAGGTAGAAGCCTCT 2877 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | | ||||| ||||| | || ||||| || Sbjct 2876 GACACAATCGAGAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 2818 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||| || || || ||||||| || ||| | ||| ||||| Sbjct 2817 ACAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTCTCCGACTACAA 2758 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||||||||| || | ||| | ||| | | |||| || ||| Sbjct 2757 CATTCAAAAAGAGTCAACTCTTCATCTTGTTCTCCGTCTGCGCGGTGGA 2709 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||| ||||| |||||||| || || || || |||||||| || || || | Sbjct 3214 TACAATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACCATCACTCTTGAGGTCGAAGC 3155 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | |||| | || || ||| ||||| ||||| | || || || Sbjct 3154 TTCCGACACTATCGAAAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCTGA 3095 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAA 23753 |||||||||||| || |||||||| || Sbjct 3094 TCAACAGCGTTTGATCTTTGCCGGTAA 3068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || ||||| |||||||||||||| || ||||| || | | Sbjct 2537 AATGCAGATCTTCGTCAAGACTCTCACCGGAAAAACGATCACACTGGAAGTCGAAGCTTC 2478 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| || |||| | || || ||||| ||||| | || ||||||| Sbjct 2477 AGATACCATTGAGAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCTCCAGATC 2419 Query 23729 AACAGCGTTTAATATTTGCCGG 23750 |||| ||||| || |||||||| Sbjct 2418 AACAACGTTTGATCTTTGCCGG 2397 >seq10049 Length=10599 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || ||||| |||||||||||||| || || Sbjct 9401 AACATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACCATCACTCTCGAAGTCGAAGCC 9342 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||| | | || || || ||||| ||||| | |||||||| Sbjct 9341 TCTGATAGCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCAGAC 9282 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || || || ||||| || || || ||||||| || ||| | ||| ||| Sbjct 9281 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTTTCCGACTAC 9222 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || || ||||| || Sbjct 9221 AATATTCAGAAGGAGTCAAC 9202 >seq12388 Length=21549 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || ||||||||||| || ||||| || || Sbjct 15278 AACATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACGATCACCCTAGAAGTCGAAGCC 15337 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | | |||||| | || ||||| ||||| ||||| | || ||||| Sbjct 15338 TCTGATAGTATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGAC 15397 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||| | || || ||||| || || || ||||| | ||||| || || ||| Sbjct 15398 CAGCAACGTCTTATCTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACCCTATCTGACTAC 15457 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || ||||| || | ||| | ||| Sbjct 15458 AATATTCAGAAGGAGTCAACCCTCCATCTCGTT 15490 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || ||||||||||| |||||||| || || | Sbjct 15790 ATGCAAATTTTTGTCAAGACGTTGACTGGTAAAACGATCACCCTCGAAGTCGAAGCCTCA 15849 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | | ||| ||||| ||||| || || | || || |||||| Sbjct 15850 GACAGCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGAATCCCTCCCGATCAA 15909 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || ||||| | ||||| | |||||||| Sbjct 15910 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGATTACAAT 15969 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || || ||| Sbjct 15970 ATTCAGAAGGAATCGACTCTTCACTTGGTT 15999 >seq8226 Length=1064 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || ||||| |||||||||||||| || || | Sbjct 1012 ATGCAAATCTTTGTCAAGACGTTGACTGGTAAAACAATCACTCTCGAAGTCGAAGCCTCT 953 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||||| | || || ||| ||||| || || | || ||||| || Sbjct 952 GATAGCATTGAAAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 893 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| ||||| ||||||| | ||||| | |||||||| Sbjct 892 CAGCGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGCACCCTTTCTGATTACAAT 833 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||| | ||| Sbjct 832 ATTCAGAAGGAGTCAACCCTCCATCTCGTT 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337950889000016