Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2527 134 1e-26 seq2468 114 1e-20 >seq2527 Length=10055 Score = 134 bits (148), Expect = 1e-26 Identities = 506/790 (64%), Gaps = 48/790 (6%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| |||||||| |||||||| || |||||||| ||||||||||| | ||||| ||||| Sbjct 5895 TTGATATTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTGCCTTCGATTGAAATGTTTTC 5836 Query 4319 CATAAAATCAAACGGATTAGTTGC--GTTGTA------------ATGTTT----TTC--A 4358 |||||| ||||||||||| ||| |||||| | || | ||| | Sbjct 5835 CATAAAGTCAAACGGATTC--TGCATGTTGTAGATCTATAAACGACGTATAAACTTCGTA 5778 Query 4359 CACTT-TAGAGCTAC-------AAGC--------------AATCGGTCAGCTACAAATTC 4396 ||| ||| | ||| | || || | ||||| ||| |||| Sbjct 5777 CACAACTAGCGTTACCTTGCTGATGCCCAGTTCAGTTAATAAGTGATCAGCAACATATTC 5718 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGCGTATG 4455 ||||| || ||||||| || || || ||||| | ||| ||| || || || | | Sbjct 5717 AATATATTGCGACATGAGTCGACAATTCATACCAATCATATC-CACTGGAAGAGCTTCGG 5659 Query 4456 TCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAG 4515 | | | |||| ||||| || || ||||| || || || | || |||| | Sbjct 5658 TTAGATACTCCTGTTCGATTTGAACAGCTTCACGTATAATTTCACACACTTGCTCTTCTG 5599 Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 |||||| | | | | || ||| |||||||||||||| | ||| | ||||| | Sbjct 5598 TTGGTTTTTGTTCGAGATACTTGTACACCAAACACGCAAAATCTCGATGGAGTCCTTCAT 5539 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 |||| ||| | |||||| || || || ||||| | || | || || |||| Sbjct 5538 CTCTTGAAATTAACTCGTTACTGTGTGTCAAACCCGGCATAAGTCCACGTTTCTTCAGCC 5479 Query 4636 AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA 4695 |||| || || ||||| || ||||| || || || ||||| || || ||||| || || | Sbjct 5478 AAAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCCTTCCACTGCAGCAAATGCAACAA 5419 Query 4696 ATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTT 4754 || ||| || | ||| | || | || |||||||| | || ||| | ||||| Sbjct 5418 CACGCATCCCAAATGAAGCATTC-TTATTTTCAATCCATTGAATTGTCCAATCTGCTTTC 5360 Query 4755 TTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCT 4814 || || | |||||| || || ||||| || | | || ||| ||| | ||| || Sbjct 5359 TTTTTTATATACGGAAAGTCGTGAATTGCGTTGAAGAGTGTATTTTGTTCGACTGGATCG 5300 Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874 | ||| || || || || | | |||||||||||| || || ||| | |||||| Sbjct 5299 TTAATGTACGTTTCGATCAATTTCGAATACATTTCAGAGTGAATTCCTTCCACTGCAATC 5240 Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934 ||||| ||| || | || || | | | ||||| | ||| | | | | Sbjct 5239 TGAAAATTGTAGAAAGAGAGTGCCTCAGGCATCTTCACTTCTTGTGTAAAACGTCCAATG 5180 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994 | ||||| ||||| || || || ||||||||||| || | || |||||||| || Sbjct 5179 AGATTTTCATTTACGATTCCATCTGAAGCTGCAAAAAATGCAAGAATGTGAGATATGAAA 5120 Query 4995 TACTGTTCGT 5004 || | |||| Sbjct 5119 TAACGCTCGT 5110 >seq2468 Length=4028 Score = 114 bits (126), Expect = 1e-20 Identities = 324/495 (65%), Gaps = 2/495 (0%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || ||||| | ||| | ||||| |||| ||| ||||| || || Sbjct 3106 AAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTC 3165 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||| | || | ||| || | |||||| || || ||||| || || || || Sbjct 3166 AACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGATCCGGAGAAA 3225 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTC 4723 || || ||||| ||||| ||||| || | | || || ||||| || ||| || Sbjct 3226 AAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCATTCTTA-TC 3284 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||||| | ||||||| ||||| ||||||| ||| |||| | ||||| Sbjct 3285 TCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCTTGAATAGC 3344 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 ||||| | | | | ||| | | || || || | || || | ||| Sbjct 3345 ATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATCTTTGAATA 3404 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || ||||| || ||| | |||||||| || | ||| || | ||||| | Sbjct 3405 CATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGG 3464 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | | ||||| | ||||| || || | ||||||||||| || || || || Sbjct 3465 CATCTTCACTTCCTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGC 3524 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||||||||||||||| | || |||||| |||| || |||| |||| || | ||| Sbjct 3525 AGCAAAAAACGCCAAAACACGGGAAATAAAGAACTGCTCATCAGTGGTAAGGTTGTGCCA 3584 Query 5024 GTGGGGCAAATCTTT 5038 ||| | || |||||| Sbjct 3585 GTGCGCCAGATCTTT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426975423085916