Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq10339 1222 0.0 seq11290 123 8e-24 >seq10339 Length=11660 Score = 1222 bits (1354), Expect = 0.0 Identities = 1479/1988 (74%), Gaps = 48/1988 (2%) Strand=Plus/Plus Query 52 CTTCTTGCGAGCCAAGGTCCGTCTCGCCGAGCCGAAAGGCTTCGAGGTGAAGCCATCGGC 111 |||| | || |||||||| ||||| |||| || ||||||||||| | | | | Sbjct 5009 CTTCCTCCGTGCCAAGGTGACGATCGCCAAGCCCAAGGGCTTCGAGGTCGACCAGGCCGA 5068 Query 112 CTTCCATCCCCTGCTCAAGCCGCACCAGCGAGCCATCGCCACCTGGCTGGTGCGCCAAGG 171 | || | || ||||| |||||||||||| || | | |||| | |||| || Sbjct 5069 CGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCTGGGCCATCCGCCTGGG 5128 Query 172 CCGCGCGGC-CTGTTTCGCGGCCTTCGGCCTGGGCAAGTCGGTAATGCAGCTTGAAGTGG 230 | ||||||| ||||| | ||||||||||||||||||| | | ||||| | || | | Sbjct 5129 CTGCGCGGCGCTGTT-CATGGCCTTCGGCCTGGGCAAGACCTTCGTGCAGTTGGAGATCG 5187 Query 231 TGCGCGTCACCCGCGACCTGGCCGGCGGCTACGCGCTCATCACCATCCCGCTGGGTGTGC 290 ||||| || || | || ||||||| | || ||| |||||||||||| |||| Sbjct 5188 TGCGCATCGTGCGTGCCCGCATCGGCGGCATGGGCCTGATCGTCATCCCGCTGGGCGTGC 5247 Query 291 GCCAGGAGTTCTACCGAGACGCCGCGATGCTCGGCATCACCGTCCGGTTCATCCGAAGTT 350 | ||||||||| ||| ||||| || || |||||||| ||| ||||||||| | Sbjct 5248 GTCAGGAGTTCATCCGCGACGCGGCACGCCTTGGCATCACGGTCAAGTTCATCCGCCGCA 5307 Query 351 TCGACGAGGTAGACGACCCCACCACCATCTACCTGACCAATTACGAGACCGTCCGCGACG 410 |||| || | |||||||| | | ||||||||| ||||| ||||| || |||||||| Sbjct 5308 TCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAACTACGAAACGATCCGCGACC 5367 Query 411 GCAAGCTCGACCCTCGCCGGTTCAGCGTGGCAAGCCTGGACGAAGCCAGTTGCCTTCGCG 470 ||||||| ||||| | | |||||||||||| ||||||||||| || ||||| |||| Sbjct 5368 GCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGACGAGGCGGCATGCCTGCGCG 5427 Query 471 GCTTCGGCGGCAGCAAGACGTTCCGCGAGTTCATGGCTCTGTTCGCTGGTGACGA---TC 527 ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| | Sbjct 5428 GCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGCTGTTCGCCGGCGACGACCGGC 5487 Query 528 GCGCCGCCGGCATCCGCG------GCGATGGCGTCCGGTACCGGTACGTGGCCACTGCCA 581 ||| | | || ||||| ||| |||||| | ||| || | ||||||||| |||| Sbjct 5488 GCGACATGGCCAACCGCGTGAAGAGCGCTGGCGTGCCGTATCGCTTCGTGGCCACGGCCA 5547 Query 582 CGCCAAGCCCGAACGAATACATCGAGCTACTGGCTTACTCGGCCTTCCTCGGCGTGATGG 641 |||| || || ||||| | ||||||| ||||| ||| |||||||| |||||||||| Sbjct 5548 CGCCCAGTCCAAACGAGTTTGTCGAGCTGCTGGCCTACAGCGCCTTCCTGGGCGTGATGG 5607 Query 642 ATGTCGGCCAGGCCAAGACCAGGTTCTTCAAACGCAACTCTGAGAAGGCCGACCAACTCA 701 | || |||||||||||||| | |||||||| |||||| |||||||||||| | || | Sbjct 5608 ACGTTGGCCAGGCCAAGACGCGTTTCTTCAAGCGCAACAGCGAGAAGGCCGACAACCTGA 5667 Query 702 C---CATCCATGCCCACAAAGAGGGCGAGTTCTGGATGTGGGTGGCGTCCTGGGCGATCT 758 | | || || | | ||| |||| |||||| |||||||||| |||||| | | Sbjct 5668 CGCTGAGCCCAGCGCGC---GAGCGCGACTTCTGGCTGTGGGTGGCAAGCTGGGCCCTGT 5724 Query 759 TCGTTCAGCGCCCCAGCGACCTCGGGTTCAGCGACGAAGGCTACGCGCTACCGGAACTGG 818 |||| ||| ||| |||||||| | ||||||||| ||||||| ||| ||| | | Sbjct 5725 TCGTGCAGAAGCCCTCGGACCTCGGCTACAGCGACGACGGCTACGAGCTGCCGCCCATCG 5784 Query 819 ACATCCGCTGGCACGAAGTACCGTCCGACCACTCGCACGCTGG--CCATGAGCGTAATGG 876 |||||||||||||||| | ||| | |||||| | ||||||| ||| | | | || Sbjct 5785 ACATCCGCTGGCACGAGATCCCGGCGGACCACGCCGACGCTGGTACCAATATGG--ACGG 5842 Query 877 CCAGGGCCGCCTGCTTC--GCAACACCGCCATTGGCGTGCAGGACGCCGC-CGCAGAGAA 933 ||||| | || ||| || || ||||| |||||| |||||| || ||| ||||| Sbjct 5843 CCAGGCGCAGATG-TTCAAGCGCCA-GGCCATCGGCGTGGTGGACGCGGCGCGC-GAGAA 5899 Query 934 GCGCGAGAGCCTTCCTGCCAGGATCGCCAAACTGATGGAGATCCGGGCCGAGGCTCCAGA 993 |||||| ||||| ||| | | ||||| |||||||| | || ||||||| || | Sbjct 5900 GCGCGACAGCCTGGATGCGCGCGTGGCCAAGATGATGGAGCTGCGCGCCGAGGACCCGGC 5959 Query 994 TGCTCACCGGATCATCTGGCATGACCTCGAGGCGGAACGCCACGCGATCGAGGCCGCTAT 1053 || ||||| | |||||||| ||||| |||| || |||| ||| |||||| ||| || Sbjct 5960 CGCCCACCGTGTGATCTGGCACGACCTGGAGGATGAGCGCCGCGCCATCGAGCGCGCCAT 6019 Query 1054 CCCCGAC-GCCGTCAGCGTCTACGGCGCCCAGGATCTGGA---AGAGCGCGAACGCGCGA 1109 |||||| |||| ||||||||||||| ||||||| | ||| |||||||| | | | Sbjct 6020 -CCCGACGGCCGCCAGCGTCTACGGCACCCAGGACCCGGAGACCGAGCGCGAGCCCCTGG 6078 Query 1110 TTGTCCAGTTCAGCGACGGCGAGTTCCAGGAACTG-GCTGCCAAGCCGGTGATCGCAGGC 1168 | || |||||||| ||| | ||||||| ||| || | |||||| ||| | ||| Sbjct 6079 TGGTGGCCTTCAGCGATGGCCTGATCCAGGAGCTGAGCAG-CAAGCCCGTGCTGCTGGGC 6137 Query 1169 AGCGGCTGCAACTTCCAGCGCCACTGCTCGTGGGCCATCTACCTGGGCATCGGCTTCAAG 1228 |||||||||||| | ||||| |||||| | ||||| |||||||||||||||||||||||| Sbjct 6138 AGCGGCTGCAACCTGCAGCGGCACTGCGCCTGGGCGATCTACCTGGGCATCGGCTTCAAG 6197 Query 1229 TTCAACGACTTCATCCAGTCCATTCACCGCCTGCACCGATTCCTGCAGACCGGCCGCGTG 1288 ||| ||||||||||||||| | |||||||| || || ||||||||||| ||| ||| Sbjct 6198 TTCGCCGACTTCATCCAGTCGGTGCACCGCCTCCAGCGCTTCCTGCAGACGCGCCAGGTG 6257 Query 1289 CGCATCGACCTGATCTATACCGAGGCCGAGCGCGACATCCGCCGCCAACTCGAACGGAAG 1348 ||||||||||||||||| ||||||||||||||||| | ||||| || ||||| || Sbjct 6258 CGCATCGACCTGATCTACACCGAGGCCGAGCGCGAGGTGCGCCGGACCCTGGAACGCAAA 6317 Query 1349 TGGCAGCAGCACAA-CACCATGGTTCAGCGCATGACCGAGATCATCAAGCAGTACGGCCT 1407 ||| |||||||| | || | || |||||||| || ||||||||| | | ||| | Sbjct 6318 TGGGCCCAGCACAAGGAGCAAGTGGCA-CGCATGACGGAAATCATCAAGGAATTCGGGTT 6376 Query 1408 GTCCGTGGCCGCCATGGCACAGACCCTCACCCGCTCCATGGGCGTGGAGCGCGTCGAGAT 1467 ||| || |||||| ||||| || | |||| ||||||||||||||||||||||| | Sbjct 6377 GTCGCACGCGGCCATGATCCAGACGCTGAGCCGCGCCATGGGCGTGGAGCGCGTCGAGGT 6436 Query 1468 ------CAAGGGCAAGGACTACACCATCGTCAACAACGACACCGTGCTCGAAACCCGCCG 1521 |||| || ||| | |||||||||||| |||| ||| || ||||| Sbjct 6437 GCGCGCGCCGGGCGGCGAGTACGTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCG 6496 Query 1522 CATGGAAAGCAACAGCGTCGGCTTGACCATCACCAGCATCCCCTTCAGCACCCAGTACGA 1581 ||||| ||| ||||||| ||| || | |||||||||||||||||||| |||||||| Sbjct 6497 CATGGCCAGCGACAGCGTGGGCCTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGA 6556 Query 1582 GTACTCGCCGAACTACGCCGACTTCGGCCACACCGACGACAACGCGCACTTCTTCGAGCA 1641 ||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||| Sbjct 6557 GTACTCGCCCAACTTCGCCGACTTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCA 6616 Query 1642 GATGGACTATCTGATCCCGGAACTGCTGCGCGTGACCATCCCCGGGCGTCTGGCCTGCAT 1701 |||||||| ||| | ||||| |||||||||||| || || || | ||||| ||| Sbjct 6617 GATGGACTTCCTGGTGCCGGAGCTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCAT 6676 Query 1702 CCACGTGAAGGATCGCATCATTCCCGGCGGAA---TGACCGGCCTTGGCTTCCAGACCGT 1758 |||||| ||| | |||||| | ||| |||| | || ||| | ||||||||||||| Sbjct 6677 CCACGTCAAGAACCGCATCGTGCCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGA 6736 Query 1759 CTACCCCTTCCACATGGA-AGTGACTCGAGCCTTCGTCAAGCATGGCTGGGCCTATATGG 1817 ||||||||| || |||| | | | || | || | || |||| || ||| Sbjct 6737 GTACCCCTTCGACGTGGACACCATCGCCTGCTTCCGCCGGGC-CGGCTTCCACTTCGTGG 6795 Query 1818 GCATGAAGACCATCGTCACCGACGTGGTTCGCGAGAACGCCCAGACCTACCGCCTTTCGT 1877 || ||||||||||||||||||||||| ||||||||| ||||||||||||||| | Sbjct 6796 GCCGCAAGACCATCGTCACCGACGTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCT 6855 Query 1878 GGACGGAGCAGTGCAAGGACGGCACCAAGATGGGTGTCGGCATGCCCGAGTACTTGCTGA 1937 | ||||| |||||||| ||| | ||||| |||||||| ||||||| |||||| Sbjct 6856 ACAGCGAGCAATGCAAGGATGGCTCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGA 6915 Query 1938 TCTTCCGCAAGCCGCCCACCGACAACTCCAACGCCTACGGCGACGTGCCGGTGGTCAAGG 1997 ||||||||||| | || |||||| | | || ||| | ||||||||| ||||| |||| Sbjct 6916 TCTTCCGCAAGGCACCGACCGACGCCAGCCGCGGCTATGCCGACGTGCCCGTGGTGAAGG 6975 Query 1998 -CAAAGCC 2004 |||| || Sbjct 6976 ACAAAACC 6983 Score = 260 bits (288), Expect = 4e-65 Identities = 351/493 (71%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 2087 CGGGCACGCTGGCAGTTGGACGCCCACGGCTNNNNNNNNNNNNNNNNNNNNCGTCCGCTG 2146 ||| | ||||||||||| ||||||||||||| || | |||| Sbjct 6993 CGGCCGCGCTGGCAGTTCGACGCCCACGGCTACGCGCGCAGCAAGGGCGACCGGCTGCTG 7052 Query 2147 ACTGAAGCGGACTTCGAAGGCATTCCGCACGACGTGATGTTCAAGCTGTACCGCGACTAC 2206 || || ||| | |||||| | | || | || || |||||||||| |||| | || Sbjct 7053 ACGCCAGAGGAGCTGGAAGGCCTCACCCATGCCGACATCTTCAAGCTGTTCCGCAAGCAC 7112 Query 2207 AGCCTGTCCACCGTCTACGACTTCGAGCACCACGTCCGCATCGGCGAATCGCTGGAGGTC 2266 ||| ||||||||||||||||||| |||| ||||||||||| |||||| | Sbjct 7113 TCGCTGGAGCGCGTCTACGACTTCGAGCACGACGTGCGCATCGGCGAGGCGCTGGCCGAG 7172 Query 2267 ACCGGGAAGCTGCCCACCGGCTTCATGCTGCTTCCACCGCAGTCCTGGCACCCGGACGTA 2326 ||| | |||||||||| |||||||||||| | |||||| |||||| |||||||| Sbjct 7173 CGCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGCAGAGCTGGCATCCGGACGTC 7232 Query 2327 TGGACCGACGTCGCCCGCATGCGGACGCTCAACGCCCAGCAGTACAGCA-AGGGCCAGGA 2385 ||||||||||| | |||||||| ||||||||| | ||||| | ||| || | || Sbjct 7233 TGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAGT-CGGCAGCCGGGCGCGA 7291 Query 2386 AATGCACCTGTGCCCGCTGCAGTTCGACATCGTCGACCGGGCCATCGTGCAGTACTCCAT 2445 ||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||| Sbjct 7292 GATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCGATCACCCAGTACTCCAT 7351 Query 2446 GGAAGGAGACCTGGTCTTCGATCCCTTCGGCGGGATCATGACCGTCCCGTACTGCGCGCT 2505 | | || || ||||| ||| ||||||||||| | ||||| || || ||| | || | Sbjct 7352 GAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACGGTGCCCTACCGGGCTGT 7411 Query 2506 GAAGCTCAAGCGCAGAGCCCGCGCCCACGAACTGAACTCCCGCTACTTCCTGGACGGTGC 2565 | ||| || | | ||||| | ||| ||| | | |||||||||||| || | Sbjct 7412 GCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTGGCCAAGCCCTACTTCCTGGATGGCGT 7471 Query 2566 CGGCTATTGCAAG 2578 |||||| ||| || Sbjct 7472 CGGCTACTGCGAG 7484 >seq11290 Length=3944 Score = 123 bits (136), Expect = 8e-24 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 |||||||||||||| | ||||||| || || ||||| | || ||||||| || Sbjct 638 CCGTTGCGGTGCTTGCCAATGATCAGTTCCGCGACGCCCTTGAGCTCGGTGTCCTTGTTG 697 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 || |||||||| ||||| || || ||||| | ||| ||||||||||||||||| ||| Sbjct 698 TAAACCTCGTCCCGGTAGACAAAAATGATGAGGTCCGCGTCCTGCTCGATCGCACCGCTA 757 Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGC 34167 ||||| || || | | | || |||||||| ||||| ||||||| ||| |||||| Sbjct 758 TCGCGTAGATCGGCATTGACTGGCCGCTTGTTGGGCCGGCGCTCCAGCTCGCGATTGAGC 817 Query 34168 TGCGACAGCACGATCACgggg 34188 || || || | || | |||| Sbjct 818 TGGGAGAGAGCCATGAAGGGG 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160436842671480