Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq1920 295 1e-75 seq4423 87.8 4e-13 >seq1920 Length=1718 Score = 295 bits (326), Expect = 1e-75 Identities = 401/555 (72%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 1125 TGGCACGACATCGACTGGTGTCGGGTCCAGCGGAATGTCCGGGGAATGCAGGTACGGATT 1184 ||||||| ||| |||||| || || | || ||| || |||||| | ||| Sbjct 1166 TGGCACGCCATTGACTGGCAGCGAGTTGAAAGGTTTGTGCGAACGATGCAGCAAAAGATC 1225 Query 1185 GCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAACGGATGCT-GAC 1243 |||||||| | ||| | ||||| ||||||| ||||| ||||| || || || Sbjct 1226 GCGAAGGCGACGCAAGAACAGGATTGGCGGCGGGTGAAAGCCCTCCAACG-ATCCTTGAT 1284 Query 1244 CCGCTCGACGTCGGCCAGGTACCTGGCTGTACGGAGAGTCACTGAAAACCAGGGCAAGCG 1303 || |||| || ||||| ||||| ||| || | || || |||||||| |||||||| Sbjct 1285 CCACTCGCACTCCGCCAGAGCTCTGGCGGTAAGGCGGGTGACCGAAAACCAAGGCAAGCG 1344 Query 1304 CACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCGGCACA 1363 ||||| || ||||| ||| || ||||| || || | || ||| |||||| Sbjct 1345 AACGGCAGGGGTCGATCGCCAACTTTGGGACACTCCGCTCCTGAAATGG---GCGGCAAT 1401 Query 1364 AGG---GTTGAAAAGGC---GCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCC 1417 || ||||||| || | ||||| || | ||| | ||||| || | |||||| Sbjct 1402 CGGTTTGTTGAAACAGCAACGAGGGTATAGGCCCCTGCCCTTGCGGCGGGTCTACATCCC 1461 Query 1418 GAAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCA 1477 || |||||||| ||||||||||||||||| || || |||||| ||| |||| ||||| Sbjct 1462 AAAATCGAACGGGAAGGAGCGCCCCCTGGGCATTCCAACCATGTTCGACCGGGCCATGCA 1521 Query 1478 GGCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTA 1537 |||||| ||||||| | || |||| | || |||| ||| |||| |||||| ||| Sbjct 1522 GGCACTTCACCTGCTAGGACTAGAGCCCGTGGCGGAAAGCACGAGCGACCCGAACTCCTA 1581 Query 1538 TGGCTTCAGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATC 1597 ||| ||||||| | || |||||||| ||||| ||| |||| | ||||| ||| ||| Sbjct 1582 TGGGTTCAGGAGAAATCGCTCCACGGCCGATGCCATGGGCCAGATATTCGTCTGCACATC 1641 Query 1598 CGGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACAT 1657 | |||||||||||||| |||| | |||||||||||||| | ||| ||||| |||||||| Sbjct 1642 CAAAAAGGCTTCGGCCCCATGGGTGCTGGAGGCGGACATCCGAGGCTGTTTCGACCACAT 1701 Query 1658 CAATCATGACTGGCT 1672 |||||| |||||||| Sbjct 1702 CAATCACGACTGGCT 1716 Score = 89.7 bits (98), Expect = 1e-13 Identities = 113/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 779 GGCAGGGGAGCCGTAAGGCGAACTGTTGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGA 838 ||||||| ||||| ||||| | ||||||| | | ||||||||||| | || ||||||| Sbjct 870 GGCAGGGAAGCCGCAAGGCAACCTGTTGGATGAGGGGGTATGGGATGGTGGAAAAAGCGA 929 Query 839 ACGCCAGGCTGTAATCGTCTGG-ATAGGGGTTGGAACATCACCCC-ACGGGAAACCGGGC 896 ||| | | |||||| || ||| ||||||||| ||| | |||| ||| |||| || || Sbjct 930 ACGGCTGCCTGTAA-CGGGTGGCATAGGGGTTCCAACTTTGCCCCAACGCGAAAGCGTGC 988 Query 897 AGACTTCTGCGTGGT-CTTTCGTCGCAAGA 925 | ||||| | |||| | |||||| ||| Sbjct 989 AAACTTCCACTTGGTGCAACCGTCGCGAGA 1018 >seq4423 Length=667 Score = 87.8 bits (96), Expect = 4e-13 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 12744 CTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTAC-CGCGCTGGGCGTGGAGAAGTAGG 12802 ||||||||||||| | | || |||| ||| | | | || ||| ||| |||||||||| Sbjct 194 CTCGCCGGTCCAGAAGGTGTAGGCCTCGTGTGCCATGCTCGATGG-CGTCGAGAAGTAGG 136 Query 12803 TCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAAT 12862 || |||| ||| ||| ||||| ||||||| ||| | | || | || ||| | Sbjct 135 TCCGGCGGTACTGCTTCTGCATCGCCATGCCGCTGGCGACCTTGTTGAGTTCCTTGAACT 76 Query 12863 TGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGT 12917 || | ||||||| | |||||||| ||||| || |||||| |||| ||| || || Sbjct 75 TGAAGGTCCAGAAGAATTCGTCGAAGTAGAAGTTGCCGTGATAGCCCTGGGCGGT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104299145163976